Burkhard Rost

112 papers A 4C 1Journal 96Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
FlatProt: 2D visualization eases protein structure comparison.
BMC Bioinform.
Tobias Olenyi, Constantin Carl, Tobias Senoner, Ivan Koludarov, Burkhard Rost
2024 J jnl
BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery.
CoRR
Peter St. John, Dejun Lin, Polina Binder, Malcolm Greaves, Vega Shah, John St. John, Adrian Lange, Patrick D. Hsu, Rajesh Illango, Arvind Ramanathan, Anima Anandkumar, David H. Brookes, Akosua Busia, Abhishaike Mahajan, Stephen Malina, Neha Prasad, Sam Sinai, Lindsay Edwards, Thomas Gaudelet, Cristian Regep, Martin Steinegger, Burkhard Rost, Alexander Brace, Kyle Hippe, Luca Naef, Keisuke Kamata, George Armstrong, Kevin Boyd, Zhonglin Cao, Han-Yi Chou, Simon Chu, Allan dos Santos Costa, Sajad Darabi, Eric Dawson, Kieran Didi, Cong Fu, Mario Geiger, Michelle Gill, Darren Hsu, Gagan Kaushik, Maria Korshunova, Steven Kothen-Hill, Youhan Lee, Meng Liu, Micha Livne, Zachary McClure, Jonathan Mitchell, Alireza Moradzadeh, Ohad Mosafi, Youssef Nashed, Saee Paliwal, Yuxing Peng, Sara Rabhi, Farhad Ramezanghorbani, Danny Reidenbach, Camir Ricketts, Brian Roland, Kushal Shah, Tyler Shimko, Hassan Sirelkhatim, Savitha Srinivasan, Abraham C. Stern, Dorota Toczydlowska, Srimukh Prasad Veccham, Niccolò Alberto Elia Venanzi, Anton Vorontsov, Jared Wilber, Isabel Wilkinson, Wei Jing Wong, Eva Xue, Cory Ye, Xin Yu, Yang Zhang, Guoqing Zhou, Becca Zandstein, Christian Dallago, Bruno Trentini, Emine Küçükbenli, Timur Rvachov, Eddie Calleja, Johnny Israeli, Harry Clifford, Risto Haukioja, Nicholas Haemel, Kyle Tretina, Neha Tadimeti, Anthony B. Costa
2024 J jnl
Expert-guided protein language models enable accurate and blazingly fast fitness prediction.
Bioinform.
Céline Marquet, Julius Schlensok, Marina Abakarova, Burkhard Rost, Elodie Laine
2023 J jnl
Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling.
CoRR
Ahmed Elnaggar, Hazem Essam, Wafaa Salah-Eldin, Walid Moustafa, Mohamed Elkerdawy, Charlotte Rochereau, Burkhard Rost
2023 J jnl
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
Nucleic Acids Res.
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
2023 J jnl
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Bioinform.
Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P. Waman, Neeladri Sen, Burkhard Rost, Christine A. Orengo
2023 J jnl
Rendering protein mutation movies with MutAmore.
BMC Bioinform.
Konstantin Weissenow, Burkhard Rost
2022 J jnl
Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP).
PLoS Comput. Biol.
Gabriel Foley, Ariane Mora, Connie M. Ross, Scott Bottoms, Leander Sützl, Marnie L. Lamprecht, Julian Zaugg, Alexandra Essebier, Brad Balderson, Rhys Newell, Raine E. S. Thomson, Bostjan Kobe, Ross T. Barnard, Luke Guddat, Gerhard Schenk, Jörg Carsten, Yosephine Gumulya, Burkhard Rost, Dietmar Haltrich, Volker Sieber, Elizabeth M. J. Gillam, Mikael Bodén
2022 J jnl
Nearest neighbor search on embeddings rapidly identifies distant protein relations.
Frontiers Bioinform.
Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost
2022 J jnl
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning.
IEEE Trans. Pattern Anal. Mach. Intell.
Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost
2022 J jnl
ProteomicsDB: toward a FAIR open-source resource for life-science research.
Nucleic Acids Res.
Ludwig Lautenbacher, Patroklos Samaras, Julian Müller, Andreas Grafberger, Marwin Shraideh, Johannes Rank, Simon T. Fuchs, Tobias K. Schmidt, Matthew The, Christian Dallago, Holger Wittges, Burkhard Rost, Helmut Krcmar, Bernhard Küster, Mathias Wilhelm
2022 J jnl
SETH predicts nuances of residue disorder from protein embeddings.
Frontiers Bioinform.
Dagmar Ilzhöfer, Michael Heinzinger, Burkhard Rost
2022 J jnl
TMbed: transmembrane proteins predicted through language model embeddings.
BMC Bioinform.
Michael Bernhofer, Burkhard Rost
2021 J jnl
Clustering FunFams using sequence embeddings improves EC purity.
Bioinform.
Maria Littmann, Nicola Bordin, Michael Heinzinger, Konstantin Schütze, Christian Dallago, Christine A. Orengo, Burkhard Rost
2021 J jnl
CodeTrans: Towards Cracking the Language of Silicone's Code Through Self-Supervised Deep Learning and High Performance Computing.
CoRR
Ahmed Elnaggar, Wei Ding, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Silvia Severini, Florian Matthes, Burkhard Rost
2021 J jnl
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Briefings Bioinform.
Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman
2021 J jnl
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res.
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
2020 J jnl
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing.
CoRR
Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost
2020 J jnl
Protein-protein and protein-nucleic acid binding residues important for common and rare sequence variants in human.
BMC Bioinform.
Jiajun Qiu, Dmitrii Nechaev, Burkhard Rost
2020 J jnl
Validity of machine learning in biology and medicine increased through collaborations across fields of expertise.
Nat. Mach. Intell.
Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna P. Ankerst, Tomer Hertz, Burkhard Rost
2020 J jnl
Variant effect predictions capture some aspects of deep mutational scanning experiments.
BMC Bioinform.
Jonas Reeb, Theresa Wirth, Burkhard Rost
2019 J jnl
Correction to: Detailed prediction of protein sub-nuclear localization.
BMC Bioinform.
Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost
2019 J jnl
Detailed prediction of protein sub-nuclear localization.
BMC Bioinform.
Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost
2019 J jnl
FunFam protein families improve residue level molecular function prediction.
BMC Bioinform.
Linus Scheibenreif, Maria Littmann, Christine A. Orengo, Burkhard Rost
2019 J jnl
Modeling aspects of the language of life through transfer-learning protein sequences.
BMC Bioinform.
Michael Heinzinger, Ahmed Elnaggar, Yu Wang, Christian Dallago, Dmitrii Nechaev, Florian Matthes, Burkhard Rost
2019 — ch.
Secondary Structure Prediction.
Encyclopedia of Bioinformatics and Computational Biology (2)
Jonas Reeb, Burkhard Rost
2018 J jnl
Correcting mistakes in predicting distributions.
Bioinform.
Valérie Marot-Lassauzaie, Michael Bernhofer, Burkhard Rost
2018 J jnl
HFSP: high speed homology-driven function annotation of proteins.
Bioinform.
Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg
2018 J jnl
LocText: relation extraction of protein localizations to assist database curation.
BMC Bioinform.
Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost
2018 J jnl
NLSdb - major update for database of nuclear localization signals and nuclear export signals.
Nucleic Acids Res.
Michael Bernhofer, Tatyana Goldberg, Silvana Wolf, Mohamed Ahmed, Julian Zaugg, Mikael Bodén, Burkhard Rost
2017 — ch.
Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge.
50 Jahre Universitäts-Informatik in München
Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost
2017 J jnl
Bioinformatics advances biology and medicine by turning big data troves into knowledge.
Inform. Spektrum
Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost
2017 J jnl
nala: text mining natural language mutation mentions.
Bioinform.
Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam, Burkhard Rost
2016 J jnl
MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
Bioinform.
Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James B. Procter, Suzanna E. Lewis, Burkhard Rost, Tatyana Goldberg
2016 J jnl
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease.
PLoS Comput. Biol.
Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost
2016 J jnl
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res.
Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak
2015 J jnl
Evolutionary profiles improve protein-protein interaction prediction from sequence.
Bioinform.
Tobias Hamp, Burkhard Rost
2015 J jnl
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.
PLoS Comput. Biol.
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015 J jnl
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.
Bioinform.
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015 J jnl
More challenges for machine-learning protein interactions.
Bioinform.
Tobias Hamp, Burkhard Rost
2014 J jnl
FreeContact: fast and free software for protein contact prediction from residue co-evolution.
BMC Bioinform.
László Kaján, Thomas A. Hopf, Matú Kala, Debora S. Marks, Burkhard Rost
2014 J jnl
ISCB: past-present perspective for the International Society for Computational Biology.
Bioinform.
Burkhard Rost
2014 J jnl
LocTree3 prediction of localization.
Nucleic Acids Res.
Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz, Michael Bernhofer, Alexander Betz, Laura Cizmadija, Kieu Trinh Do, Julia Gerke, Robert Greil, Vadim Joerdens, Maximilian Hastreiter, Katharina Hembach, Max Herzog, Maria Kalemanov, Michael Kluge, Alice Meier, Hassan Nasir, Ulrich Neumaier, Verena Prade, Jonas Reeb, Aleksandr Sorokoumov, Ilira Troshani, Susann Vorberg, Sonja Waldraff, Jonas Zierer, Henrik Nielsen, Burkhard Rost
2014 J jnl
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res.
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
2014 J jnl
tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.
Database J. Biol. Databases Curation
Juan Miguel Cejuela, Peter McQuilton, Laura Ponting, Steven J. Marygold, Raymund Stefancsik, Gillian H. Millburn, Burkhard Rost
2013 J jnl
Homology-based inference sets the bar high for protein function prediction.
BMC Bioinform.
Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane Boehm, Tatjana Braun, Maximilian Hecht, Mark Heron, Peter Hönigschmid, Thomas A. Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompass, Cedric Landerer, Yannick Mahlich, Manfred Roos, Burkhard Rost
2013 J jnl
ISCB Computational Biology Wikipedia Competition.
PLoS Comput. Biol.
Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost
2013 J jnl
ISCB: past-present perspective for the International Society for Computational Biology.
Bioinform.
Burkhard Rost
2012 J jnl
Alternative Protein-Protein Interfaces Are Frequent Exceptions.
PLoS Comput. Biol.
Tobias Hamp, Burkhard Rost
2012 J jnl
LocTree2 predicts localization for all domains of life.
Bioinform.
Tatyana Goldberg, Tobias Hamp, Burkhard Rost
2012 J jnl
Paving the future: finding suitable ISMB venues.
Bioinform.
Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso
2012 J jnl
SNPdbe: constructing an nsSNP functional impacts database.
Bioinform.
Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg
2011 J jnl
ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature.
PLoS Comput. Biol.
Richard H. Lathrop, Burkhard Rost
2011 J jnl
LocDB: experimental annotations of localization for
Nucleic Acids Res.
Shruti Rastogi, Burkhard Rost
2011 J jnl
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC Bioinform.
Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan
2010 J jnl
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Res.
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal
2010 J jnl
Protein secondary structure appears to be robust under
Bioinform.
Christian Schaefer, Avner Schlessinger, Burkhard Rost
2009 J jnl
Correlating protein function and stability through the analysis of single amino acid substitutions.
BMC Bioinform.
Yana Bromberg, Burkhard Rost
2009 — ch.
Neural Networks Predict Protein Structure and Function.
Artificial Neural Networks
Marco Punta, Burkhard Rost
2008 C conf
Comprehensive
ECCB
Yana Bromberg, Burkhard Rost
2008 J jnl
ISMB 2008 Toronto.
PLoS Comput. Biol.
Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost
2008 J jnl
MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.
Bioinform.
Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi
2008 J jnl
Physical protein-protein interactions predicted from microarrays.
Bioinform.
Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost
2008 J jnl
Powerful fusion: PSI-BLAST and consensus sequences.
Bioinform.
Dariusz Przybylski, Burkhard Rost
2008 J jnl
SNAP predicts effect of mutations on protein function.
Bioinform.
Yana Bromberg, Guy Yachdav, Burkhard Rost
2007 J jnl
ISIS: interaction sites identified from sequence.
Bioinform.
Yanay Ofran, Burkhard Rost
2007 J jnl
ISMB/ECCB 2007: The Premier Conference on Computational Biology.
PLoS Comput. Biol.
Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost
2007 J jnl
Natively Unstructured Loops Differ from Other Loops.
PLoS Comput. Biol.
Avner Schlessinger, Jinfeng Liu, Burkhard Rost
2007 J jnl
Natively unstructured regions in proteins identified from contact predictions.
Bioinform.
Avner Schlessinger, Marco Punta, Burkhard Rost
2007 — conf
Prediction of DNA-binding residues from sequence.
ISMB/ECCB (Supplement of Bioinformatics)
Yanay Ofran, Venkatesh Mysore, Burkhard Rost
2007 J jnl
Protein-Protein Interaction Hotspots Carved into Sequences.
PLoS Comput. Biol.
Yanay Ofran, Burkhard Rost
2006 — conf
Create and assess protein networks through molecular characteristics of individual proteins.
ISMB (Supplement of Bioinformatics)
Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost
2006 J jnl
Epitome: database of structure-inferred antigenic epitopes.
Nucleic Acids Res.
Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost
2006 J jnl
PROFbval: predict flexible and rigid residues in proteins.
Bioinform.
Avner Schlessinger, Guy Yachdav, Burkhard Rost
2006 J jnl
PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
Nucleic Acids Res.
Henry R. Bigelow, Burkhard Rost
2006 J jnl
Protein-Protein Interactions More Conserved within Species than across Species.
PLoS Comput. Biol.
Sven Mika, Burkhard Rost
2005 J jnl
EVAcon: a protein contact prediction evaluation service.
Nucleic Acids Res.
Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia
2005 — conf
ISMB 2005 Organization.
ISMB (Supplement of Bioinformatics)
H. V. Jagadish, David J. States, Burkhard Rost
2005 — conf
ISMB 2005.
ISMB (Supplement of Bioinformatics)
H. V. Jagadish, David J. States, Burkhard Rost
2005 J jnl
NMPdb: Database of Nuclear Matrix Proteins.
Nucleic Acids Res.
Sven Mika, Burkhard Rost
2005 J jnl
PROFcon: novel prediction of long-range contacts.
Bioinform.
Marco Punta, Burkhard Rost
2004 J jnl
AI and Bioinformatics.
AI Mag.
Janice I. Glasgow, Igor Jurisica, Burkhard Rost
2004 J jnl
Annotating Protein Function through Lexical Analysis.
AI Mag.
Rajesh Nair, Burkhard Rost
2004 J jnl
CHOP: parsing proteins into structural domains.
Nucleic Acids Res.
Jinfeng Liu, Burkhard Rost
2004 J jnl
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Nucleic Acids Res.
Rajesh Nair, Burkhard Rost
2004 J jnl
NLProt: extracting protein names and sequences from papers.
Nucleic Acids Res.
Sven Mika, Burkhard Rost
2004 — conf
Protein names precisely peeled off free text.
ISMB/ECCB (Supplement of Bioinformatics)
Sven Mika, Burkhard Rost
2004 J jnl
The PredictProtein server.
Nucleic Acids Res.
Burkhard Rost, Guy Yachdav, Jinfeng Liu
2003 J jnl
DSSPcont: continuous secondary structure assignments for proteins.
Nucleic Acids Res.
Phil Carter, Claus A. F. Andersen, Burkhard Rost
2003 J jnl
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Res.
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
2003 J jnl
LOC3D: annotate sub-cellular localization for protein structures.
Nucleic Acids Res.
Rajesh Nair, Burkhard Rost
2003 J jnl
META-PP: single interface to crucial prediction servers.
Nucleic Acids Res.
Volker A. Eyrich, Burkhard Rost
2003 J jnl
NLSdb: database of nuclear localization signals.
Nucleic Acids Res.
Rajesh Nair, Phil Carter, Burkhard Rost
2003 J jnl
NORSp: predictions of long regions without regular secondary structure.
Nucleic Acids Res.
Jinfeng Liu, Burkhard Rost
2003 J jnl
PEP: Predictions for Entire Proteomes.
Nucleic Acids Res.
Phil Carter, Jinfeng Liu, Burkhard Rost
2003 J jnl
Static benchmarking of membrane helix predictions.
Nucleic Acids Res.
Andrew Kernytsky, Burkhard Rost
2003 J jnl
The PredictProtein server.
Nucleic Acids Res.
Burkhard Rost, Jinfeng Liu
2003 J jnl
UniqueProt: creating representative protein sequence sets.
Nucleic Acids Res.
Sven Mika, Burkhard Rost
2002 J jnl
Bioinformatics in structural genomics - Editorial.
Bioinform.
Burkhard Rost, Barry Honig, Alfonso Valencia
2002 A conf
ISMB 2002
ISMB
Janice I. Glasgow, Burkhard Rost
2002 A conf
Inferring sub-cellular localization through automated lexical analysis.
ISMB
Rajesh Nair, Burkhard Rost
2002 J jnl
Target space for structural genomics revisited.
Bioinform.
Jinfeng Liu, Burkhard Rost
2001 J jnl
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinform.
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
1999 J jnl
A platform for integrating threading results with protein family analyses.
Bioinform.
Florencio Pazos, Burkhard Rost, Alfonso Valencia
1997 — conf
Learning from Evolution to Predict Protein Structure.
BCEC
Burkhard Rost
1997 J jnl
Sisyphus and prediction of protein structure.
Comput. Appl. Biosci.
Burkhard Rost, Seán I. O'Donoghue
1996 A conf
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming.
ISMB
Burkhard Rost, Rita Casadio, Piero Fariselli
1995 A conf
TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures.
ISMB
Burkhard Rost
1994 — conf
Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy.
HICSS (5)
Burkhard Rost, Chris Sander, Reinhard Schneider
1994 — —
Neuronale Netzwerke und evolutionäre Information: verbesserte Vorhersage der Sekundärstruktur von Proteinen ; (abgefasst in Englisch).
Burkhard Rost
1994 J jnl
PHD - an automatic mail server for protein secondary structure prediction.
Comput. Appl. Biosci.
Burkhard Rost, Chris Sander, Reinhard Schneider
1992 J jnl
Exercising Multi-Layered Networks on Protein Secondary Structure.
Int. J. Neural Syst.
Burkhard Rost, Chris Sander