Burkhard Morgenstern

72 papers A 1C 4Journal 56Unranked 9
YearRankTypeTitle / Venue / Authors
2022 J jnl
Insertions and deletions as phylogenetic signal in an alignment-free context.
PLoS Comput. Biol.
Niklas Birth, Thomas Dencker, Burkhard Morgenstern
2021 J jnl
S-conLSH: alignment-free gapped mapping of noisy long reads.
BMC Bioinform.
Angana Chakraborty, Burkhard Morgenstern, Sanghamitra Bandyopadhyay
2019 J jnl
Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points.
Bioinform.
Chris-André Leimeister, Thomas Dencker, Burkhard Morgenstern
2019 J jnl
Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage.
BMC Bioinform.
Anna-Katharina Lau, Svenja Dörrer, Chris-André Leimeister, Christoph Bleidorn, Burkhard Morgenstern
2018 — conf
Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees.
RECOMB-CG
Thomas Dencker, Chris-André Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern
2017 J jnl
Fast and accurate phylogeny reconstruction using filtered spaced-word matches.
Bioinform.
Chris-André Leimeister, Salma Sohrabi-Jahromi, Burkhard Morgenstern
2017 J jnl
Phylogeny reconstruction based on the length distribution of k-mismatch common substrings.
Algorithms Mol. Biol.
Burkhard Morgenstern, Svenja Schöbel, Chris-André Leimeister
2016 J jnl
rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.
PLoS Comput. Biol.
Lars Hahn, Chris-André Leimeister, Rachid Ounit, Stefano Lonardi, Burkhard Morgenstern
2015 J jnl
Estimating evolutionary distances between genomic sequences from spaced-word matches.
Algorithms Mol. Biol.
Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris Leimeister
2015 J jnl
RasBhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison.
CoRR
Lars Hahn, Chris-André Leimeister, Burkhard Morgenstern
2014 C ed.
Algorithms in Bioinformatics - 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings
WABI
Dan Brown, Burkhard Morgenstern
2014 C conf
Estimating Evolutionary Distances from Spaced-Word Matches.
WABI
Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-André Leimeister
2014 J jnl
Fast alignment-free sequence comparison using spaced-word frequencies.
Bioinform.
Chris-André Leimeister, Marcus Boden, Sebastian Horwege, Sebastian Lindner, Burkhard Morgenstern
2014 J jnl
kmacs: the
Bioinform.
Chris-André Leimeister, Burkhard Morgenstern
2013 — conf
Alignment-free sequence comparison with spaced k-mers.
GCB
Marcus Boden, Martin Schöneich, Sebastian Horwege, Sebastian Lindner, Chris Leimeister, Burkhard Morgenstern
2013 J jnl
DIALIGN at GOBICS - multiple sequence alignment using various sources of external information.
Nucleic Acids Res.
Layal Al Ait, Zaher Yamak, Burkhard Morgenstern
2013 — ed.
German Conference on Bioinformatics 2013, GCB 2013, Göttingen, Germany, September 10-13, 2013
GCB
Tim Beißbarth, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, Edgar Wingender
2012 C conf
Using protein-domain information for multiple sequence alignment.
BIBE
Layal Al Ait, Eduardo Corel, Burkhard Morgenstern
2012 J jnl
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.
Nucleic Acids Res.
Anne-Kathrin Schultz, Ingo Bulla, Mariama Abdou-Chekaraou, Emmanuel Gordien, Burkhard Morgenstern, Fabien Zoulim, Paul Dény, Mario Stanke
2011 J jnl
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.
BMC Bioinform.
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bulla, Burkhard Morgenstern, Mario Stanke, Ingo Bulla
2011 J jnl
MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data.
BMC Bioinform.
Cong V. C. Truong, Linn F. Groeneveld, Burkhard Morgenstern, Eildert Groeneveld
2010 J jnl
A
Bioinform.
Eduardo Corel, Florian Pitschi, Burkhard Morgenstern
2010 J jnl
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS.
Nucleic Acids Res.
Amarendran Ramaswami Subramanian, Suvrat Hiran, Rasmus Steinkamp, Peter Meinicke, Eduardo Corel, Burkhard Morgenstern
2010 J jnl
HIV classification using the coalescent theory.
Bioinform.
Ingo Bulla, Anne-Kathrin Schultz, Fabian Schreiber, Ming Zhang, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
2009 J jnl
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis.
Future Gener. Comput. Syst.
Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter
2009 J jnl
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.
BMC Bioinform.
Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern
2009 J jnl
OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.
Nucleic Acids Res.
Fabian Schreiber, Gert Wörheide, Burkhard Morgenstern
2009 J jnl
jpHMM: Improving the reliability of recombination prediction in HIV-1.
Nucleic Acids Res.
Anne-Kathrin Schultz, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
2008 J jnl
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.
Algorithms Mol. Biol.
Amarendran Ramaswami Subramanian, Michael Kaufmann, Burkhard Morgenstern
2008 J jnl
Gene prediction in metagenomic fragments: A large scale machine learning approach.
BMC Bioinform.
Katharina Jasmin Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke
2008 J jnl
Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps.
Algorithms Mol. Biol.
Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern
2008 J jnl
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.
Algorithms Mol. Biol.
Holger Wagner, Burkhard Morgenstern, Andreas W. M. Dress
2006 J jnl
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
BMC Bioinform.
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
2006 J jnl
AUGUSTUS:
Nucleic Acids Res.
Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern
2006 J jnl
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
BMC Bioinform.
Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack
2006 J jnl
Multiple sequence alignment with user-defined anchor points.
Algorithms Mol. Biol.
Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler
2006 J jnl
New journal: Algorithms for Molecular Biology.
Algorithms Mol. Biol.
Burkhard Morgenstern, Peter F. Stadler
2006 J jnl
TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.
Nucleic Acids Res.
Maike Tech, Burkhard Morgenstern, Peter Meinicke
2006 J jnl
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
Nucleic Acids Res.
Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
2005 J jnl
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.
Nucleic Acids Res.
Mario Stanke, Burkhard Morgenstern
2005 J jnl
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment.
BMC Bioinform.
Amarendran Ramaswami Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern
2005 J jnl
Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
Nucleic Acids Res.
Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern
2005 J jnl
Multiple sequence alignment with user-defined constraints at GOBICS.
Bioinform.
Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
2005 J jnl
TICO: a tool for improving predictions of prokaryotic translation initiation sites.
Bioinform.
Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke
2004 J jnl
AGenDA: gene prediction by cross-species sequence comparison.
Nucleic Acids Res.
Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern
2004 J jnl
AUGUSTUS: a web server for gene finding in eukaryotes.
Nucleic Acids Res.
Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern
2004 J jnl
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors.
BMC Bioinform.
Martin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern
2004 J jnl
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
Nucleic Acids Res.
Burkhard Morgenstern
2004 — conf
Multiple sequence alignment with user-defined constraints.
German Conference on Bioinformatics
Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler
2004 J jnl
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.
BMC Bioinform.
Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl
2004 J jnl
The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.
Nucleic Acids Res.
Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern
2003 J jnl
AGenDA: homology-based gene prediction.
Bioinform.
Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern
2003 J jnl
AltAVisT: Comparing alternative multiple sequence alignments.
Bioinform.
Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress
2003 C conf
Divide-and-conquer multiple alignment with segment-based constraints.
ECCB
Michael Sammeth, Burkhard Morgenstern, Jens Stoye
2003 J jnl
Fast and sensitive multiple alignment of large genomic sequences.
BMC Bioinform.
Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern
2002 J jnl
A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences.
Appl. Math. Lett.
Burkhard Morgenstern
2002 J jnl
AGenDA: Gene prediction by comparative sequence analysis.
Silico Biol.
Oliver Rinner, Burkhard Morgenstern
2002 J jnl
Exon discovery by genomic sequence alignment.
Bioinform.
Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes
2002 — conf
Fast and Sensitive Alignment of Large Genomic Sequences.
CSB
Michael Brudno, Burkhard Morgenstern
2002 J jnl
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res.
Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil
2001 — conf
Gene prediction by comparative sequence analysis.
German Conference on Bioinformatics
Oliver Rinner, Burkhard Morgenstern
2001 J jnl
The HIB database of annotated UniGene clusters.
Bioinform.
Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern
2000 J jnl
A space-efficient algorithm for aligning large genomic sequences.
Bioinform.
Burkhard Morgenstern
2000 — conf
Speeding Up the DIALIGN Multiple Alignment Program by Using the 'Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB).
JOBIM
Saïd Abdeddaïm, Burkhard Morgenstern
1999 J jnl
An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinform.
Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
1999 J jnl
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.
Bioinform.
Burkhard Morgenstern
1998 — conf
An exact solution for the Segment-to-Segment multiple sequence alignment problem.
German Conference on Bioinformatics
Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
1998 — conf
DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment.
German Conference on Bioinformatics
Burkhard Morgenstern
1998 J jnl
DIALIGN: finding local similarities by multiple sequence alignment.
Bioinform.
Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner
1998 A conf
Segment-Based Scores for Pairwise and Multiple Sequence Alignments.
ISMB
Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress
1997 — conf
Dialign 1.0: Multiple alignment by Segment rather than by Position comparison.
German Conference on Bioinformatics
Burkhard Morgenstern, Thomas Werner
1996 — —
Sequenzalignment auf der Basis von Segmentvergleichen.
Burkhard Morgenstern