Bruce Tidor

19 papers A* 1A 1Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2013 J jnl
Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology.
PLoS Comput. Biol.
Tina Toni, Bruce Tidor
2011 J jnl
An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability.
BMC Syst. Biol.
XiaoNa Wei, Bu-Cong Han, Jing-Xian Zhang, X. H. Liu, C. Y. Tan, Yu Yang Jiang, Boon Chuan Low, Bruce Tidor, Yuzong Chen
2011 A* conf
Biochemical oscillator sensitivity analysis in the presence of conservation constraints.
DAC
Jared E. Toettcher, Anya Castillo, Bruce Tidor, Jacob White
2010 — conf
Model Transformation of Metabolic Networks using a Petri Net Based Framework.
ACSD/Petri Nets Workshops
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
2009 — conf
A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems.
IWANN (2)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
2009 J jnl
Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.
J. Comput. Chem.
Michael D. Altman, Jaydeep P. Bardhan, Jacob K. White, Bruce Tidor
2009 J jnl
CHARMM: The biomolecular simulation program.
J. Comput. Chem.
Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, Victor Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus
2009 J jnl
MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets.
Bioinform.
Bracken M. King, Bruce Tidor
2009 J jnl
Rotamer optimization for protein design through MAP estimation and problem-size reduction.
J. Comput. Chem.
Eun-Jong Hong, Shaun M. Lippow, Bruce Tidor, Tomás Lozano-Pérez
2009 J jnl
Sensitivity Analysis for Oscillating Dynamical Systems.
SIAM J. Sci. Comput.
A. Katharina Wilkins, Bruce Tidor, Jacob K. White, Paul I. Barton
2008 J jnl
A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics.
ACM J. Emerg. Technol. Comput. Syst.
Shih-Hsien Kuo, Bruce Tidor, Jacob White
2008 J jnl
Optimal Drug Cocktail Design: Methods for Targeting Molecular Ensembles and Insights from Theoretical Model Systems.
J. Chem. Inf. Model.
Mala L. Radhakrishnan, Bruce Tidor
2008 J jnl
Stimulus Design for Model Selection and Validation in Cell Signaling.
PLoS Comput. Biol.
Joshua F. Apgar, Jared E. Toettcher, Drew Endy, Forest M. White, Bruce Tidor
2007 — conf
Efficient optimization of electrostatic interactions between biomolecules.
CDC
Jaydeep P. Bardhan, Michael D. Altman, Jacob K. White, Bruce Tidor
2007 J jnl
The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism.
PLoS Comput. Biol.
A. Katharina Wilkins, Paul I. Barton, Bruce Tidor
2006 J jnl
FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White
2002 A conf
Fast methods for simulation of biomolecule electrostatics.
ICCAD
Shihhsien S. Kuo, Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White
1993 — conf
An Analysis of Selection Procedures with Particular Attention Paid to Proportional and Boltzmann Selection.
ICGA
Michael de la Maza, Bruce Tidor
1992 — ch.
Increased Flexibility in Genetic Algorithms: the Use of variable Boltzmann Selective pressure to control Propagation.
Computer Science and Operations Research
Michael de la Maza, Bruce Tidor