Bruce J. Aronow

42 papers B 4C 1Misc 3Journal 27Unranked 7

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Unsupervised biomarker discovery leveraging foundation models: a multimodal approach to clinical data integration. Neural Comput. Appl. Shyam Sundar Debsarkar, Bruce J. Aronow, V. B. Surya Prasath
2025	J	`jnl`	Advancements in automated nuclei segmentation for histopathology using you only look once-driven approaches: A systematic review. Comput. Biol. Medicine Shyam Sundar Debsarkar, Bruce J. Aronow, V. B. Surya Prasath
2025	J	`jnl`	Benchmarking HEp-2 cell segmentation methods in indirect immunofluorescence images - standard models to deep learning. Comput. Biol. Medicine Balaji Iyer, S. Deoghare, Krish Ranjan, Bruce J. Aronow, V. B. Surya Prasath
2025	J	`jnl`	Multimodal Ensemble Fusion Deep Learning Using Histopathological Images and Clinical Data for Glioma Subtype Classification. IEEE Access Satoshi Shirae, Shyam Sundar Debsarkar, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2025	B	`conf`	Multiple Instance Learning Using Reduced Deep Learning Model For Glioma Subtype Classification. KES Satoshi Shirae, Shyam Sundar Debsarkar, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2025	—	`conf`	NeuroGleam: Illuminating Small Vessel Disease Detection Through Deep Learning Based Segmentation of Brain MRI White Matter Hyperintensities. AIPR Balaji Iyer, Brady J. Williamson, V. B. Surya Prasath, Bruce J. Aronow, Pooja Khatri, Heidi Sucharew, Vivek Khandwala, Joseph LaPorta, Lily Wang, Rebecca Cornelius, Mary Gaskill-Shipley, Thomas Tomsick, David Wang, Thomas Maloney, Paul S. Horn, Janice Carrozzella, Brett M. Kissela, Achala Vagal
2025	B	`conf`	Vision Transformers for Histopathological Image Classification with Efficient Head Pruning. KES Seddik Boudissa, Shyam Sundar Debsarkar, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2024	J	`jnl`	Deep learning-based IDH1 gene mutation prediction using histopathological imaging and clinical data. Comput. Biol. Medicine Riku Nakagaki, Shyam Sundar Debsarkar, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2024	—	`conf`	Vision Transformers and CNN-Based Knowledge-Distillation for Histopathological Image Classification. FSDM Seddik Boudissa, Shyam Sundar Debsarkar, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2023	J	`jnl`	Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? J. Biomed. Informatics Amelia L. M. Tan, Emily J. Getzen, Meghan R. Hutch, Zachary H. Strasser, Alba Gutiérrez-Sacristán, Trang T. Le, Arianna Dagliati, Michele Morris, David A. Hanauer, Bertrand Moal, Clara-Lea Bonzel, William Yuan, Lorenzo Chiudinelli, Priyam Das, Harrison G. Zhang, Bruce J. Aronow, Paul Avillach, Gabriel A. Brat, Tianxi Cai, Chuan Hong, William G. La Cava, He Hooi Will Loh, Yuan Luo, Shawn N. Murphy, Kee Yuan Hgiam, Gilbert S. Omenn, Lav P. Patel, Malarkodi J. Samayamuthu, Emily R. Shriver, Zahra Shakeri Hossein Abad, Byorn W. L. Tan, Shyam Visweswaran, Xuan Wang, Griffin M. Weber, Zongqi Xia, Bertrand Verdy, Qi Long, Danielle L. Mowery, John H. Holmes
2022	J	`jnl`	CellDrift: inferring perturbation responses in temporally sampled single-cell data. Briefings Bioinform. Kang Jin, Daniel J. Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda Szczesniak, Bruce J. Aronow
2022	J	`jnl`	Data Augmentation Using Generative Adversarial Networks for Multi-Class Segmentation of Lung Confocal IF Images. J. Adv. Comput. Intell. Intell. Informatics Daiki Katsuma, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow
2022	J	`jnl`	International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber
2021	J	`jnl`	Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images. BMC Bioinform. Anna Maria Masci, Scott White, Ben Neely, Maryanne Ardini-Polaske, Carol B. Hill, Ravi S. Misra, Bruce J. Aronow, Nathan Gaddis, Lina Yang, Susan E. Wert, Scott M. Palmer, Cliburn Chan
2019	—	`conf`	Multi-Class Segmentation of Lung Immunofluorescence Confocal Images Using Deep Learning. BIBM Shu Isaka, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath
2018	Misc	`conf`	Session Introduction. PSB Dana C. Crawford, Alexander A. Morgan, Joshua C. Denny, Bruce J. Aronow, Steven E. Brenner
2017	—	`conf`	Improving the generalization of disease stage classification with deep CNN for Glioma histopathological images. BIBM Asami Yonekura, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow, Haruhiko Takase
2017	Misc	`conf`	Session Introduction. PSB Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner
2016	B	`conf`	A Study on Nuclei Segmentation, Feature Extraction and Disease Stage Classification for Human Brain Histopathological Images. KES Kiichi Fukuma, V. B. Surya Prasath, Hiroharu Kawanaka, Bruce J. Aronow, Haruhiko Takase
2016	B	`conf`	A study on feature extraction and disease stage classification for Glioma pathology images. FUZZ-IEEE Kiichi Fukuma, V. B. Surya Prasath, Hiroharu Kawanaka, Bruce J. Aronow, Haruhiko Takase
2016	Misc	`conf`	Session Introduction. PSB Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner
2016	J	`jnl`	Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. Nat. Andre Olsson, Meenakshi Venkatasubramanian, Viren K. Chaudhri, Bruce J. Aronow, Nathan Salomonis, Harinder Singh, H. Leighton Grimes
2015	—	`conf`	Cell nuclei segmentation in glioma histopathology images with color decomposition based active contours. BIBM V. B. Surya Prasath, Kiichi Fukuma, Bruce J. Aronow, Hiroharu Kawanaka
2015	C	`conf`	Feature extraction and disease stage classification for Glioma histopathology images. HealthCom Kiichi Fukuma, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow, Haruhiko Takase
2014	—	`conf`	Comparative study on feature descriptors for brain image analysis. SCIS&ISIS Kazuhiko Tamaki, Kiichi Fukuma, Hiroharu Kawanaka, Haruhiko Takase, Shinji Tsuruoka, Bruce J. Aronow, Shikha Chaganti
2014	J	`jnl`	The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio. Bioinform. Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara
2014	J	`jnl`	ToppMiR: ranking microRNAs and their mRNA targets based on biological functions and context. Nucleic Acids Res. Chao Wu, Eric E. Bardes, Anil G. Jegga, Bruce J. Aronow
2013	—	`conf`	A Biclustering Algorithm to Discover Functional Modules from ENCODE ChIP-Seq Data. ICDM Workshops Chao Wu, Arjun Bakshi, Bruce J. Aronow, Anil G. Jegga, Raj Bhatnagar
2013	J	`jnl`	Computational drug repositioning through heterogeneous network clustering. BMC Syst. Biol. Chao Wu, Ranga Chandra Gudivada, Bruce J. Aronow, Anil G. Jegga
2010	J	`jnl`	Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation. BMC Bioinform. Ramy K. Aziz, Bruce J. Aronow, William L. Taylor, Sarah Rowe, Rita Kansal, Mark J. Walker, Malak Kotb
2010	J	`jnl`	PhenoHM: human-mouse comparative phenome-genome server. Nucleic Acids Res. Divya Sardana, Suresh Vasa, Nishanth Vepachedu, Jing Chen, Ranga Chandra Gudivada, Bruce J. Aronow, Anil G. Jegga
2010	J	`jnl`	ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems. Nucleic Acids Res. Vivek Kaimal, Eric E. Bardes, Scott C. Tabar, Anil G. Jegga, Bruce J. Aronow
2009	J	`jnl`	Correction: Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinform. Jing Chen, Bruce J. Aronow, Anil G. Jegga
2009	J	`jnl`	Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinform. Jing Chen, Bruce J. Aronow, Anil G. Jegga
2009	J	`jnl`	Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships. BMC Bioinform. Xiaoyan A. Qu, Ranga Chandra Gudivada, Anil G. Jegga, Eric K. Neumann, Bruce J. Aronow
2009	J	`jnl`	ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. Jing Chen, Eric E. Bardes, Bruce J. Aronow, Anil G. Jegga
2008	J	`jnl`	Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge. J. Biomed. Informatics Ranga Chandra Gudivada, Xiaoyan A. Qu, Jing Chen, Anil G. Jegga, Eric K. Neumann, Bruce J. Aronow
2007	J	`jnl`	Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data. BMC Bioinform. Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic
2007	J	`jnl`	GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. Nucleic Acids Res. Anil G. Jegga, Jing Chen, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Ranga Chandra Gudivada, Sue Kong, Vivek Kaimal, Bruce J. Aronow
2007	J	`jnl`	Improved human disease candidate gene prioritization using mouse phenotype. BMC Bioinform. Jing Chen, Huan Xu, Bruce J. Aronow, Anil G. Jegga
2007	J	`jnl`	PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. Nucleic Acids Res. Anil G. Jegga, Sivakumar Gowrisankar, Jing Chen, Bruce J. Aronow
2005	J	`jnl`	CisMols Analyzer: identification of compositionally similar Nucleic Acids Res. Anil G. Jegga, Ashima Gupta, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Steven Connolly, Kevin Finley, Bruce J. Aronow