Brooke L. Fridley

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
FastPCA: An R package for fast singular value decomposition.
J. Open Source Softw.
Kimberly R. Ward, Mitchell Hayes, Lauren C. Peres, Brooke L. Fridley, Steven Eschrich, Alex C. Soupir
2025 J jnl
scSpatialSIM: a simulator of spatial single-cell molecular data.
SoftwareX
Alex C. Soupir, Julia Wrobel, Jordan H. Creed, Oscar E. Ospina, Christopher M. Wilson, Brandon J. Manley, Lauren C. Peres, Brooke L. Fridley
2024 J jnl
BatchFLEX: feature-level equalization of X-batch.
Bioinform.
Joshua T. Davis, Alyssa N. Obermayer, Alex C. Soupir, Rebecca S. Hesterberg, Thac Duong, Ching-Yao Yang, Ken Phong Dao, Brandon J. Manley, G. Daniel Grass, Dorina Avram, Paulo C. Rodriguez, Brooke L. Fridley, Xiaoqing Yu, Mingxiang Teng, Xuefeng Wang, Timothy I. Shaw
2022 J jnl
Tumor immune cell clustering and its association with survival in African American women with ovarian cancer.
PLoS Comput. Biol.
Christopher M. Wilson, Alex C. Soupir, Ram Thapa, Jordan H. Creed, Jonathan Nguyen, Carlos Moran Segura, Travis A. Gerke, Joellen M. Schildkraut, Lauren C. Peres, Brooke L. Fridley
2022 J jnl
spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics.
Bioinform.
Oscar E. Ospina, Christopher M. Wilson, Alex C. Soupir, Anders Berglund, Inna Smalley, Kenneth Y. Tsai, Brooke L. Fridley
2021 J jnl
spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data.
Bioinform.
Jordan H. Creed, Christopher M. Wilson, Alex C. Soupir, Christelle M. Colin-Leitzinger, Gregory J. Kimmel, Oscar E. Ospina, Nicholas H. Chakiryan, Joseph Markowitz, Lauren C. Peres, Anna Coghill, Brooke L. Fridley
2020 J jnl
GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis.
Bioinform.
Qian Li, Kate Fisher, Wenjun Meng, Bin Fang, Eric A. Welsh, Eric B. Haura, John M. Koomen, Steven A. Eschrich, Brooke L. Fridley, Yian Ann Chen
2020 J jnl
Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization.
Comput. Biol. Medicine
Prabhakar Chalise, Yonghui Ni, Brooke L. Fridley
2018 J jnl
Subject level clustering using a negative binomial model for small transcriptomic studies.
BMC Bioinform.
Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley
2016 J jnl
An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients.
F1000Research
Richard Meier, Stefan Graw, Joseph Usset, Rama Raghavan, Junqiang Dai, Prabhakar Chalise, Shellie Ellis, Brooke L. Fridley, Devin C. Koestler
2016 J jnl
InterSIM: Simulation tool for multiple integrative 'omic datasets'.
Comput. Methods Programs Biomed.
Prabhakar Chalise, Rama Raghavan, Brooke L. Fridley
2013 J jnl
PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data.
Bioinform.
Nicholas B. Larson, Brooke L. Fridley
2012 — conf
Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets.
EvoBIO
Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Brooke L. Fridley, Prabhakar Chalise, Marylyn D. Ritchie
2012 J jnl
Comparison of penalty functions for sparse canonical correlation analysis.
Comput. Stat. Data Anal.
Prabhakar Chalise, Brooke L. Fridley
2008 J jnl
Reproducibility of genotypes as measured by the affymetrix GeneChip
Comput. Stat. Data Anal.
Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei S. Rodin, Eric Boerwinkle, Kent R. Bailey