Brian Walenz

12 papers A* 1B 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
Weighted minimizer sampling improves long read mapping.
Bioinform.
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy
2019 J jnl
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
PLoS Comput. Biol.
Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
2011 J jnl
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing.
Bioinform.
Brian Walenz, Liliana Florea
2010 J jnl
An algorithm for automated closure during assembly.
BMC Bioinform.
Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton
2008 J jnl
Aggressive assembly of pyrosequencing reads with mates.
Bioinform.
Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton
2008 J jnl
Consensus generation and variant detection by Celera Assembler.
Bioinform.
Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton
2005 J jnl
A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data.
J. Comput. Biol.
Ross A. Lippert, Clark M. Mobarry, Brian Walenz
2005 J jnl
A Tool for Analyzing Mate Pairs in Assemblies (TAMPA).
J. Comput. Biol.
Ian M. Dew, Brian Walenz, Granger G. Sutton
2004 J jnl
1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap.
J. Comput. Biol.
Alberto Caprara, Robert D. Carr, Sorin Istrail, Giuseppe Lancia, Brian Walenz
2001 B conf
101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem.
RECOMB
Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail
2001 — conf
Visualization challenges for a new cyberpharmaceutical computing paradigm.
IEEE Symposium on Parallel and Large-Data Visualization and Graphics
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
2000 A* conf
Algorithmic strategies in combinatorial chemistry.
SODA
Deborah Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz