Brian Jiménez-García

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
HADDOCK3: A Modular and Versatile Platform for Integrative Modeling of Biomolecular Complexes.
J. Chem. Inf. Model.
Marco Giulini, Victor Reys, João M. C. Teixeira, Brian Jiménez-García, Rodrigo V. Honorato, Anna Kravchenko, Xiaotong Xu, Raphaëlle Versini, Anna Engel, Stefan Verhoeven, Alexandre M. J. J. Bonvin
2023 J jnl
Rational Prediction of PROTAC-Compatible Protein-Protein Interfaces by Molecular Docking.
J. Chem. Inf. Model.
Gilberto Pereira, Brian Jiménez-García, Riccardo Pellarin, Guillaume Launay, Sangwook Wu, Juliette Martin, Paulo C. T. Souza
2023 J jnl
The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.
Nucleic Acids Res.
Brian Jiménez-García, Jorge Roel-Touris, Didier Barradas-Bautista
2021 J jnl
Structural biology in the clouds: The WeNMR-EOSC Ecosystem.
CoRR
Rodrigo Vargas Honorato, Panagiotis I. Koukos, Brian Jiménez-García, Andrei Tsaregorodtsev, Marco Verlato, Andrea Giachetti, Antonio Rosato, Alexandre M. J. J. Bonvin
2020 J jnl
LightDock goes information-driven.
Bioinform.
Jorge Roel-Touris, Alexandre M. J. J. Bonvin, Brian Jiménez-García
2020 J jnl
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.
Bioinform.
Francesco Ambrosetti, Tobias Hegelund Olsen, Pier Paolo Olimpieri, Brian Jiménez-García, Edoardo Milanetti, Paolo Marcatili, Alexandre M. J. J. Bonvin
2020 J jnl
pyDockEneRes: per-residue decomposition of protein-protein docking energy.
Bioinform.
Miguel Romero-Durana, Brian Jiménez-García, Juan Fernández-Recio
2019 J jnl
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.
Bioinform.
Brian Jiménez-García, Katarina Elez, Panagiotis I. Koukos, Alexandre M. J. J. Bonvin, Anna Vangone
2019 J jnl
SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation.
Bioinform.
Justina Jankauskaite, Brian Jiménez-García, Justas Dapkunas, Juan Fernández-Recio, Iain H. Moal
2018 J jnl
LightDock: a new multi-scale approach to protein-protein docking.
Bioinform.
Brian Jiménez-García, Jorge Roel-Touris, Miguel Romero-Durana, Miquel Vidal, Daniel Jiménez-González, Juan Fernández-Recio
2017 J jnl
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
Bioinform.
Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio
2015 J jnl
CCharPPI web server: computational characterization of protein-protein interactions from structure.
Bioinform.
Iain H. Moal, Brian Jiménez-García, Juan Fernández-Recio
2015 J jnl
pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
Nucleic Acids Res.
Brian Jiménez-García, Carles Pons, Dmitri I. Svergun, Pau Bernadó, Juan Fernández-Recio
2013 J jnl
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
Bioinform.
Brian Jiménez-García, Carles Pons, Juan Fernández-Recio