Brian G. Pierce

14 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Exploring the potential of structure-based deep learning approaches for T cell receptor design.
PLoS Comput. Biol.
Helder Veras Ribeiro filho, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R. Felbinger, José Geraldo de Carvalho Pereira, Brian G. Pierce, Paulo Sérgio Lopes-de-Oliveira
2023 J jnl
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.
Nucleic Acids Res.
Rui Yin, Helder Veras Ribeiro filho, Valerie Lin, Ragul Gowthaman, Melyssa Cheung, Brian G. Pierce
2021 J jnl
CoV3D: a database of high resolution coronavirus protein structures.
Nucleic Acids Res.
Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Jared Adolf-Bryfogle, William R. Schief, Brian G. Pierce
2021 J jnl
High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.
Bioinform.
Tyler Borrman, Brian G. Pierce, Thom Vreven, Brian M. Baker, Zhiping Weng
2021 J jnl
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants.
PLoS Comput. Biol.
Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce
2019 J jnl
TCR3d: The T cell receptor structural repertoire database.
Bioinform.
Ragul Gowthaman, Brian G. Pierce
2018 J jnl
TCRmodel: high resolution modeling of T cell receptors from sequence.
Nucleic Acids Res.
Ragul Gowthaman, Brian G. Pierce
2015 — ed.
2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Washington, DC, USA, November 9-12, 2015
BIBM
Jun Huan, Satoru Miyano, Amarda Shehu, Xiaohua Tony Hu, Bin Ma, Sanguthevar Rajasekaran, Vijay K. Gombar, Matthieu-P. Schapranow, Illhoi Yoo, Jiayu Zhou, Brian Chen, Vinay Pai, Brian G. Pierce
2014 J jnl
Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor.
PLoS Comput. Biol.
Brian G. Pierce, Lance M. Hellman, Moushumi Hossain, Nishant K. Singh, Craig W. Vander Kooi, Zhiping Weng, Brian M. Baker
2014 J jnl
Evaluating template-based and template-free protein-protein complex structure prediction.
Briefings Bioinform.
Thom Vreven, Howook Hwang, Brian G. Pierce, Zhiping Weng
2014 J jnl
Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.
BMC Bioinform.
Brian G. Pierce, Thom Vreven, Zhiping Weng
2014 J jnl
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.
Bioinform.
Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, Zhiping Weng
2013 J jnl
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Nucleic Acids Res.
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C. Greven, Bong-Hyun Kim, Jill Moore, Brian G. Pierce, Xianjun Dong, Daniel Virgil, Ewan Birney, Jui-Hung Hung, Zhiping Weng
2005 J jnl
M-ZDOCK: a grid-based approach for C
Bioinform.
Brian G. Pierce, Weiwei Tong, Zhiping Weng