Brian Drawert

20 papers B 1Journal 16Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2022 J jnl
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res.
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2021 J jnl
Coordinating cell polarization and morphogenesis through mechanical feedback.
PLoS Comput. Biol.
Samhita P. Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R. Petzold, Otger Campàs
2021 J jnl
Epidemiological modeling in StochSS Live!
Bioinform.
Richard M. Jiang, Bruno Jacob, Matthew Geiger, Sean Matthew, Bryan Rumsey, Prashant Singh, Fredrik Wrede, Tau-Mu Yi, Brian Drawert, Andreas Hellander, Linda R. Petzold
2021 J jnl
Modified specifications grading in computer science: preliminary assessment and experience across five undergraduate courses.
J. Comput. Sci. Coll.
Kevin R. Sanft, Brian Drawert, Adam Whitley
2019 J jnl
A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems.
J. Comput. Phys.
Brian Drawert, Bruno Jacob, Zhen Li, Tau-Mu Yi, Linda R. Petzold
2018 J jnl
The effect of cell geometry on polarization in budding yeast.
PLoS Comput. Biol.
Michael Trogdon, Brian Drawert, Carlos Gomez, Samhita P. Banavar, Tau-Mu Yi, Otger Campàs, Linda R. Petzold
2016 J jnl
MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME.
SIAM J. Sci. Comput.
Brian Drawert, Michael Trogdon, Salman Zubair Toor, Linda R. Petzold, Andreas Hellander
2016 J jnl
Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
PLoS Comput. Biol.
Mahdi Golkaram, Stefan Hellander, Brian Drawert, Linda R. Petzold
2016 J jnl
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
PLoS Comput. Biol.
Brian Drawert, Andreas Hellander, Benjamin B. Bales, Debjani Banerjee, Giovanni Bellesia, Bernie J. Daigle Jr., Geoffrey Douglas, Mengyuan Gu, Anand Gupta, Stefan Hellander, Christopher B. Horuk, Dibyendu Nath, Aviral Takkar, Sheng Wu, Per Lötstedt, Chandra Krintz, Linda R. Petzold
2015 J jnl
MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME.
CoRR
Brian Drawert, Michael Trogdon, Salman Zubair Toor, Linda R. Petzold, Andreas Hellander
2014 — conf
Automatic and portable cloud deployment for scientific simulations.
HPCS
Christopher B. Horuk, Geoffrey Douglas, Anand Gupta, Chandra Krintz, Benjamin B. Bales, Giovanni Bellesia, Brian Drawert, Rich Wolski, Linda R. Petzold, Andreas Hellander
2014 — conf
CloudTracker: Using Execution Provenance to Optimize the Cost of Cloud Use.
GECON
Geoffrey Douglas, Brian Drawert, Chandra Krintz, Rich Wolski
2014 J jnl
Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting.
J. Comput. Phys.
Andreas Hellander, Michael J. Lawson, Brian Drawert, Linda R. Petzold
2013 J jnl
Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splitting
CoRR
Andreas Hellander, Michael J. Lawson, Brian Drawert, Linda R. Petzold
2013 J jnl
Spatial Stochastic Dynamics Enable Robust Cell Polarization.
PLoS Comput. Biol.
Michael J. Lawson, Brian Drawert, Mustafa Khammash, Linda R. Petzold, Tau-Mu Yi
2012 — conf
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology.
BIOINFORMATICS
Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold
2012 J jnl
Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics.
J. Grid Comput.
Chris Bunch, Brian Drawert, Navraj Chohan, Chandra Krintz, Linda R. Petzold, Khawaja S. Shams
2012 B conf
Reducing Complexity in Management of eScience Computations.
CCGRID
Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold
2012 J jnl
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
BMC Syst. Biol.
Brian Drawert, Stefan Engblom, Andreas Hellander