Brian D. Ondov

21 papers Journal 17Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track.
J. Biomed. Informatics
Brian D. Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman
2026 J jnl
MedViz: An Agent-based, Visual-guided Research Assistant for Navigating Biomedical Literature.
CoRR
Huan He, Xueqing Peng, Yutong Xie, Qijia Liu, Chia-Hsuan Chang, Lingfei Qian, Brian D. Ondov, Qiaozhu Mei, Hua Xu
2025 J jnl
JEBS: A Fine-grained Biomedical Lexical Simplification Task.
CoRR
William Xia, Ishita Unde, Brian D. Ondov, Dina Demner-Fushman
2025 J jnl
Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track.
CoRR
Brian D. Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman
2025 J jnl
SemNovel - A new approach to detecting semantic novelty of biomedical publications using embeddings of large language models.
J. Biomed. Informatics
Xueqing Peng, Yutong Xie, Huan He, Brian D. Ondov, Kalpana Raja, Qijia Liu, Qiaozhu Mei, Hua Xu
2025 J jnl
TopicForest: embedding-driven hierarchical clustering and labeling for biomedical literature.
J. Biomed. Informatics
Chia-Hsuan Chang, Brian D. Ondov, Bin Choi, Xueqing Peng, Huan He, Hua Xu
2024 — conf
Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests.
NAACL-HLT
Brian D. Ondov, Kush Attal, Dina Demner-Fushman
2024 — conf
Sentence-Aligned Simplification of Biomedical Abstracts.
AIME (1)
Brian D. Ondov, Dina Demner-Fushman
2024 — conf
Towards Enhanced Topic Discovery on Semantic Maps for Biomedical Literature Exploration.
VAHC
Bin Choi, Brian D. Ondov, Huan He, Hua Xu
2024 J jnl
Visualizing multilayer spatiotemporal epidemiological data with animated geocircles.
J. Am. Medical Informatics Assoc.
Brian D. Ondov, Harsh B. Patel, Ai-Te Kuo, John H. Kastner, Yunheng Han, Hong Wei, Niklas Elmqvist, Hanan Samet
2023 J jnl
An efficient region expansion algorithm for regular triangulated meshes.
Pattern Recognit. Lett.
Brian D. Ondov, Hanan Samet
2022 J jnl
A Dataset for Plain Language Adaptation of Biomedical Abstracts.
CoRR
Kush Attal, Brian D. Ondov, Dina Demner-Fushman
2022 J jnl
A survey of automated methods for biomedical text simplification.
J. Am. Medical Informatics Assoc.
Brian D. Ondov, Kush Attal, Dina Demner-Fushman
2022 J jnl
CoronaViz: Visualizing Multilayer Spatiotemporal COVID-19 Data with Animated Geocircles.
CoRR
Brian D. Ondov, Harsh B. Patel, Ai-Te Kuo, Hanan Samet, John H. Kastner, Yunheng Han, Hong Wei, Niklas Elmqvist
2021 — —
Revealing Perceptual Proxies in Comparative Data Visualization.
Brian D. Ondov
2021 J jnl
Revealing Perceptual Proxies with Adversarial Examples.
IEEE Trans. Vis. Comput. Graph.
Brian D. Ondov, Fumeng Yang, Matthew Kay, Niklas Elmqvist, Steven Franconeri
2020 J jnl
The Perceptual Proxies of Visual Comparison.
IEEE Trans. Vis. Comput. Graph.
Nicole Jardine, Brian D. Ondov, Niklas Elmqvist, Steven Franconeri
2019 J jnl
Face to Face: Evaluating Visual Comparison.
IEEE Trans. Vis. Comput. Graph.
Brian D. Ondov, Nicole Jardine, Niklas Elmqvist, Steven Franconeri
2011 J jnl
Interactive metagenomic visualization in a Web browser.
BMC Bioinform.
Brian D. Ondov, Nicholas H. Bergman, Adam M. Phillippy
2010 J jnl
An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.
Bioinform.
Brian D. Ondov, Charles Cochran, Mark Landers, Gavin D. Meredith, Miroslav Dudas, Nicholas H. Bergman
2008 J jnl
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.
Bioinform.
Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman