Bree Cummins

15 papers Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes.
BMC Bioinform.
Francis C. Motta, Robert C. Moseley, Bree Cummins, Anastasia Deckard, Steven B. Haase
2022 J jnl
Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation.
SIAM J. Appl. Dyn. Syst.
Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang
2022 J jnl
Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data.
CoRR
Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon
2022 J jnl
Joint realizability of monotone Boolean functions.
Theor. Comput. Sci.
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2020 J jnl
Multistability in the epithelial-mesenchymal transition network.
BMC Bioinform.
Ying Xin, Bree Cummins, Tomás Gedeon
2019 J jnl
A poset metric from the directed maximum common edge subgraph.
CoRR
Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2019 J jnl
Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models.
SIAM J. Appl. Dyn. Syst.
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2018 — conf
Combinatorial Dynamics for Regulatory Networks.
MLCSB
Zane Huttinga, Bree Cummins, Tomas Geadon
2018 J jnl
Identifying robust hysteresis in networks.
PLoS Comput. Biol.
Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow
2018 J jnl
Model Rejection and Parameter Reduction via Time Series.
SIAM J. Appl. Dyn. Syst.
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
2017 — conf
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN).
CMSB
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
2016 J jnl
Combinatorial Representation of Parameter Space for Switching Networks.
SIAM J. Appl. Dyn. Syst.
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok
2015 J jnl
On the Efficacy of State Space Reconstruction Methods in Determining Causality.
SIAM J. Appl. Dyn. Syst.
Bree Cummins, Tomás Gedeon, Kelly Spendlove
2012 J jnl
A Spatial Model of Mosquito Host-Seeking Behavior.
PLoS Comput. Biol.
Bree Cummins, Ricardo Cortez, Ivo M. Foppa, Justin Walbeck, James Mac Hyman
2010 J jnl
Computation of three-dimensional Brinkman flows using regularized methods.
J. Comput. Phys.
Ricardo Cortez, Bree Cummins, Karin Leiderman, Douglas Varela