Boya Ji

23 papers A* 1Journal 14Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
TransEHR: Alignment-free electronic health records continual learning across feature spaces.
Expert Syst. Appl.
Xiongjun Zhao, Zhengyu Liu, Boya Ji, Peng Xi, Shaoliang Peng
2025 J jnl
A Knowledge Graph Enhanced Pre-Trained Large Language Model for Predicting MicroRNA-circRNA Interactions.
Big Data Min. Anal.
Jiren Zhou, Rui Niu, Boya Ji, Zhuhong You, Xuequn Shang
2025 A* conf
Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning.
AAAI
Wenwu Zeng, Liangrui Pan, Boya Ji, Liwen Xu, Shaoliang Peng
2025 J jnl
CellMsg: graph convolutional networks for ligand-receptor-mediated cell-cell communication analysis.
Briefings Bioinform.
Hong Xia, Boya Ji, Debin Qiao, Shaoliang Peng
2025 J jnl
scDCA: deciphering the dominant cell communication assembly of downstream functional events from single-cell RNA-seq data.
Briefings Bioinform.
Boya Ji, Xiaoqi Wang, Xiang Wang, Liwen Xu, Shaoliang Peng
2024 J jnl
A hierarchical GNN across semantic and topological domains for predicting circRNA-microRNA interactions.
Knowl. Based Syst.
Ji-Ren Zhou, Boya Ji, Rui Niu, Xuequn Shang, Zhuhong You
2024 — conf
MRF-XGBLC: Large-scale gene regulatory network inference based on multi-model fusion.
BIBM
Liang Bai, Liwen Xu, Boya Ji, Shulin Wang, Shaoliang Peng
2024 J jnl
MUSCLE: multi-view and multi-scale attentional feature fusion for microRNA-disease associations prediction.
Briefings Bioinform.
Boya Ji, Haitao Zou, Liwen Xu, Xiaolan Xie, Shaoliang Peng
2024 — conf
MinimapPool: an improved flexible and efficient parallel algorithm based on minimap2.
BIBM
Zhenang Wang, Yingbo Cui, Jiandong Shang, Boya Ji, Jianan Li, Shaoliang Peng
2024 J jnl
SAE-Impute: imputation for single-cell data via subspace regression and auto-encoders.
BMC Bioinform.
Liang Bai, Boya Ji, Shulin Wang
2024 — conf
SeqCCC: A Sequence-Informed Ligand-Receptor Interaction Prediction Method for Cell-Cell Communication Inference.
BIBM
Boya Ji, Hong Xia, Dezun Dong, Shaoliang Peng
2024 J jnl
SpaCCC: Large Language Model-Based Cell-Cell Communication Inference for Spatially Resolved Transcriptomic Data.
Big Data Min. Anal.
Boya Ji, Xiaoqi Wang, Debin Qiao, Liwen Xu, Shaoliang Peng
2024 — conf
SpaChat: Integrating Single-Cell Foundation Model with Cell Graph Network for Spatially Resolved Cell-Cell Communication Inference.
BIBM
Debin Qiao, Boya Ji, Hong Xia, Shaoliang Peng
2023 J jnl
Biomedical Knowledge Graph Embedding With Capsule Network for Multi-Label Drug-Drug Interaction Prediction.
IEEE Trans. Knowl. Data Eng.
Xiaorui Su, Zhuhong You, Deshuang Huang, Lei Wang, Leon Wong, Boya Ji, Bowei Zhao
2023 — conf
ImmRegInformer: an interpretable Transformer-based method for prioritizing immune-regulatory cancer drivers.
BIBM
Liwen Xu, Boya Ji, Yijun Peng, Wending Pi, Xiangxiang Zeng, Peng Zhao, Shaoliang Peng
2022 J jnl
MFDNN: multi-channel feature deep neural network algorithm to identify COVID19 chest X-ray images.
Health Inf. Sci. Syst.
Liangrui Pan, Boya Ji, Hetian Wang, Lian Wang, Mingting Liu, Mitchai Chongcheawchamnan, Shaoliang Peng
2022 — conf
MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing.
BIBM
Weiming Xiang, Yingbo Cui, Yaning Yang, Ang Zhang, Boya Ji, Shaoliang Peng
2022 J jnl
Noise-reducing attention cross fusion learning transformer for histological image classification of osteosarcoma.
Biomed. Signal Process. Control.
Liangrui Pan, Hetian Wang, Lian Wang, Boya Ji, Mingting Liu, Mitchai Chongcheawchamnan, Yuan Jin, Shaoliang Peng
2022 J jnl
Noise-reducing attention cross fusion learning transformer for histological image classification of osteosarcoma.
CoRR
Liangrui Pan, Hetian Wang, Lian Wang, Boya Ji, Mingting Liu, Mitchai Chongcheawchamnan, Yuan Jin, Shaoliang Peng
2021 — conf
DFL-PiDA: Prediction of Piwi-interacting RNA-Disease Associations based on Deep Feature Learning.
BIBM
Boya Ji, Jiawei Luo, Liangrui Pan, Xiaolan Xie, Shaoliang Peng
2021 — conf
FEDI: Few-shot learning based on Earth Mover's Distance algorithm combined with deep residual network to identify diabetic retinopathy.
BIBM
Liangrui Pan, Peng Zhang, Fei Xia, Boya Ji, Wenjuan Liu, Hetian Wang, Yuan Jin, Mitchai Chongcheawchamnan, Shaoliang Peng
2021 J jnl
SANE: A sequence combined attentive network embedding model for COVID-19 drug repositioning.
Appl. Soft Comput.
Xiao-Rui Su, Zhuhong You, Lei Wang, Lun Hu, Leon Wong, Boya Ji, Bo-Wei Zhao
2018 J jnl
An evaluation of the design and construction of energy management platform for public buildings based on WSR system approach.
Kybernetes
Boya Ji, Yuming Liu, Zhanyong Jin