Boris Lenhard - RankMe

24 papers Journal 24

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation. PLoS Comput. Biol. Sarvesh Nikumbh, Boris Lenhard
2022	J	`jnl`	JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic Acids Res. Jaime Abraham Castro-Mondragón, Rafael Riudavets Puig, Ieva Rauluseviciute, Roza Berhanu lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y. Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoît Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2020	J	`jnl`	JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. Oriol Fornes, Jaime Abraham Castro-Mondragón, Aziz Khan, Robin van der Lee, Xi Zhang, Phillip Andrew Richmond, Bhavi P. Modi, Solenne Correard, Marius Gheorghe, Damir Baranasic, Walter Santana-Garcia, Ge Tan, Jeanne Chèneby, Benoît Ballester, François Parcy, Albin Sandelin, Boris Lenhard, Wyeth W. Wasserman, Anthony Mathelier
2019	J	`jnl`	A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates. Bioinform. Alexander J. Nash, Boris Lenhard
2019	J	`jnl`	CNEr: A toolkit for exploring extreme noncoding conservation. PLoS Comput. Biol. Ge Tan, Dimitris Polychronopoulos, Boris Lenhard
2018	J	`jnl`	JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2018	J	`jnl`	JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2016	J	`jnl`	JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. Anthony Mathelier, Oriol Fornes, David J. Arenillas, Chih-Yu Chen, Grégoire Denay, Jessica J. Y. Lee, Wenqiang Shi, Casper Shyr, Ge Tan, Rebecca Worsley-Hunt, Allen W. Zhang, François Parcy, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2016	J	`jnl`	TFBSTools: an R/bioconductor package for transcription factor binding site analysis. Bioinform. Ge Tan, Boris Lenhard
2014	J	`jnl`	JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Res. Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang, François Parcy, Rebecca Worsley-Hunt, David J. Arenillas, Sorana Buchman, Chih-Yu Chen, Alice Yi Chou, Hans Ienasescu, Jonathan S. Lim, Casper Shyr, Ge Tan, Michelle Zhou, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2014	J	`jnl`	Two independent transcription initiation codes overlap on vertebrate core promoters. Nat. Vanja Haberle, Nan Li, Yavor Hadzhiev, Charles Plessy, Christopher Previti, Chirag Nepal, Jochen Gehrig, Xianjun Dong, Altuna Akalin, Ana Maria Suzuki, Wilfred F. J. van IJcken, Olivier Armant, Marco Ferg, Uwe Strähle, Piero Carninci, Ferenc Müller, Boris Lenhard
2013	J	`jnl`	OikoBase: a genomics and developmental transcriptomics resource for the urochordate Nucleic Acids Res. Gemma B. Danks, Coen Campsteijn, Mrutyunjaya Parida, Stephen Butcher, Harsha Doddapaneni, Bolei Fu, Raul Petrin, Raghu Metpally, Boris Lenhard, Patrick Wincker, Daniel Chourrout, Eric M. Thompson, J. Robert Manak
2010	J	`jnl`	JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res. Elodie Portales-Casamar, Supat Thongjuea, Andrew T. Kwon, David J. Arenillas, Xiaobei Zhao, Eivind Valen, Dimas Yusuf, Boris Lenhard, Wyeth W. Wasserman, Albin Sandelin
2010	J	`jnl`	Translog, a web browser for studying the expression divergence of homologous genes. BMC Bioinform. Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard
2008	J	`jnl`	In Silico Detection of Sequence Variations Modifying Transcriptional Regulation. PLoS Comput. Biol. Malin C. Andersen, Pär G. Engström, Stuart Lithwick, David J. Arenillas, Per Eriksson, Boris Lenhard, Wyeth W. Wasserman, Jacob Odeberg
2008	J	`jnl`	JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin
2007	J	`jnl`	RNAdb 2.0 - an expanded database of mammalian non-coding RNAs. Nucleic Acids Res. Ken C. Pang, Stuart Stephen, Marcel E. Dinger, Pär G. Engström, Boris Lenhard, John S. Mattick
2006	J	`jnl`	A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res. Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, Boris Lenhard
2005	J	`jnl`	RNAdb - a comprehensive mammalian noncoding RNA database. Nucleic Acids Res. Ken C. Pang, Stuart Stephen, Pär G. Engström, Khairina Tajul-Arifin, Weisan Chen, Claes Wahlestedt, Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick
2004	J	`jnl`	ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res. Albin Sandelin, Wyeth W. Wasserman, Boris Lenhard
2004	J	`jnl`	Grid Computing For The Analysis Of Regulatory Elements In Co-Regulated Sets Of Genes. Parallel Process. Lett. Johan Geijer, Boris Lenhard, Roxana Merino-Martinez, Gunnar Norstedt, Amilcar Flores-Morales
2004	J	`jnl`	HGVbase: a curated resource describing human DNA variation and phenotype relationships. Nucleic Acids Res. D. Fredman, G. Munns, Daniel Rios, F. Sjöholm, Marianne Siegfried, Boris Lenhard, Heikki Lehväslaiho, Anthony J. Brookes
2004	J	`jnl`	JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. Albin Sandelin, Wynand Alkema, Pär G. Engström, Wyeth W. Wasserman, Boris Lenhard
2002	J	`jnl`	TFBS: Computational framework for transcription factor binding site analysis. Bioinform. Boris Lenhard, Wyeth W. Wasserman