Bogdan Pasaniuc

37 papers B 4C 1Misc 1Journal 27Unranked 4

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations. Bioinform. Kangcheng Hou, Stephanie M. Gogarten, Joohyun Kim, Xing Hua, Julie-Alexia Dias, Quan Sun, Ying Wang, Taotao Tan, Polygenic Risk Methods in Diverse Populations (PRIMED) Consortium Methods Working Group, Elizabeth G. Atkinson, Alicia Martin, Jonathan Shortt, Jibril Hirbo, Yun Li, Bogdan Pasaniuc, Haoyu Zhang
2023	J	`jnl`	twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. Bioinform. Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso
2021	J	`jnl`	A two-step approach to testing overall effect of gene-environment interaction for multiple phenotypes. Bioinform. Arunabha Majumdar, Kathryn S. Burch, Tanushree Haldar, Sriram Sankararaman, Bogdan Pasaniuc, W. James Gauderman, John S. Witte
2021	J	`jnl`	Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits. PLoS Comput. Biol. Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
2021	Misc	`conf`	Integrative Analyses Identify Susceptibility Genes Underlying COVID-19 Hospitalization. AMIA Kritika Singh, Gita Pathak, Tyne Miller-Flemming, Frank Wendt, Nava Ehsan, Kangcheng Hou, Ruth Johnson, Zeyun Lu, Shyamalika Gopalan, Loic Yang, Pejman Mohammadi, Bogdan Pasaniuc, Renato Polimanti, Lea Davis, Nicholas Mancuso
2021	J	`jnl`	Leveraging eQTLs to identify individual-level tissue of interest for a complex trait. PLoS Comput. Biol. Arunabha Majumdar, Claudia Giambartolomei, Na Cai, Tanushree Haldar, Tommer Schwarz, Michael J. Gandal, Jonathan Flint, Bogdan Pasaniuc
2021	J	`jnl`	Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
2020	B	`conf`	A Scalable Method for Estimating the Regional Polygenicity of Complex Traits. RECOMB Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
2020	—	`conf`	Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky
2019	J	`jnl`	RAISS: robust and accurate imputation from summary statistics. Bioinform. Hanna Julienne, Huwenbo Shi, Bogdan Pasaniuc, Hugues Aschard
2019	B	`conf`	Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation. RECOMB Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman
2018	J	`jnl`	A Bayesian framework for multiple trait colocalization from summary association statistics. Bioinform. Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos
2018	J	`jnl`	A unifying framework for joint trait analysis under a non-infinitesimal model. Bioinform. Ruth Johnson, Huwenbo Shi, Bogdan Pasaniuc, Sriram Sankararaman
2017	J	`jnl`	Enhanced methods to detect haplotypic effects on gene expression. Bioinform. Robert Brown, Gleb Kichaev, Nicholas Mancuso, James Boocock, Bogdan Pasaniuc
2017	J	`jnl`	Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinform. Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc
2015	J	`jnl`	A Spatial Haplotype Copying Model with Applications to Genotype Imputation. J. Comput. Biol. Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
2015	J	`jnl`	A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data. Bioinform. Huwenbo Shi, Bogdan Pasaniuc, Kenneth L. Lange
2015	J	`jnl`	Identification of causal genes for complex traits. Bioinform. Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin
2014	B	`conf`	A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. RECOMB Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
2014	J	`jnl`	Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals. PLoS Comput. Biol. Robert Brown, Bogdan Pasaniuc
2014	J	`jnl`	Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. Bioinform. Bogdan Pasaniuc, Noah Zaitlen, Huwenbo Shi, Gaurav Bhatia, Alexander Gusev, Joseph Pickrell, Joel Hirschhorn, David P. Strachan, Nick Patterson, Alkes L. Price
2014	—	`conf`	Identifying causal variants at loci with multiple signals of association. BCB Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin
2013	J	`jnl`	Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin
2013	J	`jnl`	Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinform. Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin
2012	J	`jnl`	Analysis of case-control association studies with known risk variants. Bioinform. Noah Zaitlen, Bogdan Pasaniuc, Nick Patterson, Samuela Pollack, Benjamin Voight, Leif Groop, David Altshuler, Brian E. Henderson, Laurence N. Kolonel, Loic Le Marchand, Kevin Waters, Christopher A. Haiman, Barbara E. Stranger, Emmanouil T. Dermitzakis, Peter Kraft, Alkes L. Price
2012	J	`jnl`	Fast and accurate inference of local ancestry in Latino populations. Bioinform. Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin
2011	J	`jnl`	Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
2011	J	`jnl`	Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
2011	J	`jnl`	Optimal Testing of Digital Microfluidic Biochips. INFORMS J. Comput. Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky
2010	B	`conf`	Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
2009	J	`jnl`	GEDI: Scalable Algorithms for Genotype Error Detection and Imputation CoRR Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2009	—	`conf`	Imputation-Based Local Ancestry Inference in Admixed Populations. ISBRA Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu
2009	J	`jnl`	Inference of locus-specific ancestry in closely related populations. Bioinform. Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin
2008	J	`jnl`	Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. J. Comput. Biol. Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2008	J	`jnl`	Highly Scalable Genotype Phasing by Entropy Minimization. IEEE ACM Trans. Comput. Biol. Bioinform. Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc
2007	C	`conf`	Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. WABI Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2006	—	`conf`	Highly Scalable Genotype Phasing by Entropy Minimization. EMBC Bogdan Pasaniuc, Ion I. Mandoiu