Bo Liu

42 papers Journal 30Unranked 12
YearRankTypeTitle / Venue / Authors
2025 — conf
RVC: A Real-Time Variant Calling Framework for Short-Read Sequencing Data.
BIBM
Miao Cui, Xian Yu, Tao Jiang, Yadong Wang, Bo Liu, Guohua Wang, Yadong Liu
2024 J jnl
Kled: an ultra-fast and sensitive structural variant detection tool for long-read sequencing data.
Briefings Bioinform.
Zhendong Zhang, Tao Jiang, Gaoyang Li, Shuqi Cao, Yadong Liu, Bo Liu, Yadong Wang
2024 J jnl
miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data.
Briefings Bioinform.
Miao Cui, Yadong Liu, Xian Yu, Hongzhe Guo, Tao Jiang, Yadong Wang, Bo Liu
2023 J jnl
HNetGO: protein function prediction via heterogeneous network transformer.
Briefings Bioinform.
Xiaoshuai Zhang, Huannan Guo, Fan Zhang, Xuan Wang, Kaitao Wu, Shizheng Qiu, Bo Liu, Yadong Wang, Yang Hu, Junyi Li
2023 J jnl
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kaitao Wu, Lexiang Wang, Bo Liu, Yang Liu, Yadong Wang, Junyi Li
2023 J jnl
Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoshuai Zhang, Lixin Wang, Hucheng Liu, Xiaofeng Zhang, Bo Liu, Yadong Wang, Junyi Li
2023 J jnl
ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
Linlin Du, Rui Han, Bo Liu, Yadong Wang, Junyi Li
2023 J jnl
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information.
Bioinform.
Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li
2022 J jnl
Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiao Ye, Yulin Wu, Jiangsheng Pi, Hong Li, Bo Liu, Yadong Wang, Junyi Li
2022 J jnl
OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection.
Comput. Biol. Chem.
Zhongqing Zhang, Qiqi Jiao, Yang Zhang, Bo Liu, Yadong Wang, Junyi Li
2021 J jnl
Erratum to: abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinform.
Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing
2021 J jnl
Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction.
BMC Bioinform.
Ming He, Chen Huang, Bo Liu, Yadong Wang, Junyi Li
2021 J jnl
Fast and SNP-aware short read alignment with SALT.
BMC Bioinform.
Wei Quan, Bo Liu, Yadong Wang
2021 J jnl
IIMLP: integrated information-entropy-based method for LncRNA prediction.
BMC Bioinform.
Junyi Li, Huinian Li, Xiao Ye, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Qing Liao, Bo Liu, Yadong Wang
2021 J jnl
SKSV: ultrafast structural variation detection from circular consensus sequencing reads.
Bioinform.
Yadong Liu, Tao Jiang, Junhao Su, Bo Liu, Tianyi Zang, Yadong Wang
2021 J jnl
ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering.
Comput. Biol. Chem.
Junyi Li, Wei Jiang, Henry Han, Jing Liu, Bo Liu, Yadong Wang
2021 — conf
ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding.
ICIC (3)
Naile Shi, Yulin Wu, Linlin Du, Bo Liu, Yadong Wang, Junyi Li
2021 J jnl
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinform.
Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing
2021 J jnl
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang, Bo Liu
2020 — conf
Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq.
BIBM
Zhe Cui, Bo Liu, Liran Juan, Tianyi Zang, Tao Jiang, Yadong Wang
2020 — conf
GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks.
BIBM
Junyi Li, Lixin Wang, Xiaoshuai Zhang, Bo Liu, Yadong Wang
2020 J jnl
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network.
Comput. Biol. Chem.
Junyi Li, Yuan Ping, Hong Li, Huinian Li, Ying Liu, Bo Liu, Yadong Wang
2019 — conf
A Bidirectional Fuzzy Index and Approximate Search Algorithm for Next Generation Sequencing.
BIBM
Wei Quan, Guangri Quan, Bo Liu, Yadong Wang
2019 J jnl
Fast read alignment with incorporation of known genomic variants.
BMC Medical Informatics Decis. Mak.
Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang
2019 J jnl
Integrated entropy-based approach for analyzing exons and introns in DNA sequences.
BMC Bioinform.
Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu, Yadong Wang
2019 — conf
Prediction of Human LncRNAs Based on Integrated Information Entropy Features.
ICIC (2)
Junyi Li, Huinian Li, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Bo Liu, Yadong Wang
2019 — conf
SALT: a fast, memory-efficient and SNP-aware short read alignment tool.
BIBM
Wei Quan, Bo Liu, Yadong Wang
2019 J jnl
TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain.
Bioinform.
Yan Gao, Bo Liu, Yadong Wang, Yi Xing
2019 J jnl
rMETL: sensitive mobile element insertion detection with long read realignment.
Bioinform.
Tao Jiang, Bo Liu, Junyi Li, Yadong Wang
2018 — conf
Fast variation-aware read alignment with deBGA-VARA.
BIBM
Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang
2018 — conf
deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexing.
BIBM
Dengfeng Guan, Bo Liu, Yadong Wang
2018 — conf
rCANID: read Clustering and Assembly-based Novel Insertion Detection tool.
BIBM
Yilei Fu, Tao Jiang, Bo Liu, Yadong Wang
2017 J jnl
Accurate annotation of metagenomic data without species-level references.
Int. J. Data Min. Bioinform.
Haobin Yao, Tak Wah Lam, H. F. Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
2017 J jnl
LAMSA: fast split read alignment with long approximate matches.
Bioinform.
Bo Liu, Yan Gao, Yadong Wang
2017 J jnl
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Bioinform.
Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang
2016 — conf
Accurate annotation of metagenomic data without species-level references.
BIBM
Haobin Yao, Tak Wah Lam, Hing-Fung Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
2016 J jnl
deBGA: read alignment with de Bruijn graph-based seed and extension.
Bioinform.
Bo Liu, Hongzhe Guo, Michael Brudno, Yadong Wang
2016 J jnl
deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encoding.
Bioinform.
Bo Liu, Dixian Zhu, Yadong Wang
2016 J jnl
rHAT: fast alignment of noisy long reads with regional hashing.
Bioinform.
Bo Liu, Dengfeng Guan, Mingxiang Teng, Yadong Wang
2015 J jnl
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads.
BMC Bioinform.
Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
2013 — conf
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach.
BCB
Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang
2012 J jnl
A differentor-based adaptive ontology-matching approach.
J. Inf. Sci.
Peigang Xu, Yadong Wang, Bo Liu