Blerina Sinaimeri

62 papers A 1B 5C 5Journal 42Unranked 9
YearRankTypeTitle / Venue / Authors
2025 — conf
Comparing Community Structures in Knowledge Graphs Across Similarity Measures and Clustering Algorithms.
ADBIS (Short Papers)
Cosimo Poccianti, Blerina Sinaimeri
2025 — conf
Disjoint Covering of Bipartite Graphs with s-clubs.
SOFSEM (2)
Angelo Monti, Blerina Sinaimeri
2025 J jnl
Effects of graph operations on star pairwise compatibility graphs.
Comput. J.
Angelo Monti, Blerina Sinaimeri
2025 J jnl
On star-k-PCGs: exploring class boundaries for small k values.
Acta Informatica
Angelo Monti, Blerina Sinaimeri
2025 J jnl
VIRI: a visualization tool for tree reconciliations.
BMC Bioinform.
Maurizio Patrignani, Giordano Dionisi, Blerina Sinaimeri, Tiziana Calamoneri
2024 J jnl
Disjoint covering of bipartite graphs with
CoRR
Angelo Monti, Blerina Sinaimeri
2024 J jnl
Effects of graph operations on star pairwise compatibility graphs.
CoRR
Angelo Monti, Blerina Sinaimeri
2024 J jnl
From Stars to Diamonds: Counting and Listing Almost Complete Subgraphs in Large Networks.
Comput. J.
Irene Finocchi, Renan Leon Garcia, Blerina Sinaimeri
2024 J jnl
On Generalizations of Pairwise Compatibility Graphs.
Discret. Math. Theor. Comput. Sci.
Tiziana Calamoneri, Manuel Lafond, Angelo Monti, Blerina Sinaimeri
2024 J jnl
STARGATE-X: a Python package for statistical analysis on the REACTOME network.
J. Integr. Bioinform.
Andrea Marino, Blerina Sinaimeri, Enrico Tronci, Tiziana Calamoneri
2023 J jnl
A General Framework for Enumerating Equivalence Classes of Solutions.
Algorithmica
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2023 — conf
A Network Approach to Aquatic Food Web Dynamics.
CIBB
Davide Torre, Giuseppe F. Italiano, Blerina Sinaimeri
2023 — conf
On Graphs that are not Star-k-PCGs (short paper).
ICTCS
Angelo Monti, Blerina Sinaimeri
2023 B conf
On Star-Multi-interval Pairwise Compatibility Graphs.
WALCOM
Angelo Monti, Blerina Sinaimeri
2022 J jnl
Efficiently sparse listing of classes of optimal cophylogeny reconciliations.
Algorithms Mol. Biol.
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2022 J jnl
On star-multi-interval pairwise compatibility graphs.
CoRR
Angelo Monti, Blerina Sinaimeri
2022 — conf
On the Domination Number of t-Constrained de Bruijn Graphs.
ICTCS
Tiziana Calamoneri, Angelo Monti, Blerina Sinaimeri
2022 J jnl
On the domination number of $t$-constrained de Bruijn graphs.
Discret. Math. Theor. Comput. Sci.
Tiziana Calamoneri, Angelo Monti, Blerina Sinaimeri
2022 B conf
Some Problems Related to the Space of Optimal Tree Reconciliations - (Invited Talk).
WALCOM
Tiziana Calamoneri, Blerina Sinaimeri
2021 A conf
A General Framework for Enumerating Equivalence Classes of Solutions.
ESA
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2021 J jnl
A family of tree-based generators for bubbles in directed graphs.
J. Graph Algorithms Appl.
Vicente Acuña, Leandro Ishi Soares de Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri
2021 B conf
Compressed Weighted de Bruijn Graphs.
CPM
Giuseppe F. Italiano, Nicola Prezza, Blerina Sinaimeri, Rossano Venturini
2021 C conf
Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations.
WABI
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2021 J jnl
On Generalizations of Pairwise Compatibility Graphs.
CoRR
Tiziana Calamoneri, Angelo Monti, Blerina Sinaimeri
2020 C conf
A Family of Tree-Based Generators for Bubbles in Directed Graphs.
IWOCA
Vicente Acuña, Leandro Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
Algorithms for the quantitative Lock/Key model of cytoplasmic incompatibility.
Algorithms Mol. Biol.
Tiziana Calamoneri, Mattia Gastaldello, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
Capybara: equivalence ClAss enumeration of coPhylogenY event-BAsed ReconciliAtions.
Bioinform.
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
Lazy listing of equivalence classes - A paper on dynamic programming and tropical circuits.
CoRR
Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
On Bubble Generators in Directed Graphs.
Algorithmica
Vicente Acuña, Roberto Grossi, Giuseppe Francesco Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
String factorisations with maximum or minimum dimension.
Theor. Comput. Sci.
Angelo Monti, Blerina Sinaimeri
2019 — conf
Comparing Related Phylogenetic Trees.
ICTCS
Tiziana Calamoneri, Angelo Di Mambro, Blerina Sinaimeri
2019 J jnl
Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny.
IEEE ACM Trans. Comput. Biol. Bioinform.
Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot
2019 J jnl
String factorisations with maximum or minimum dimension.
CoRR
Angelo Monti, Blerina Sinaimeri
2018 J jnl
Geometric medians in reconciliation spaces of phylogenetic trees.
Inf. Process. Lett.
Katharina T. Huber, Vincent Moulton, Marie-France Sagot, Blerina Sinaimeri
2018 J jnl
On variants of Vertex Geography on undirected graphs.
Discret. Appl. Math.
Angelo Monti, Blerina Sinaimeri
2017 B conf
On Bubble Generators in Directed Graphs.
WG
Vicente Acuña, Roberto Grossi, Giuseppe F. Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri
2017 J jnl
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
Algorithms Mol. Biol.
Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2016 — conf
On Maximal Chain Subgraphs and Covers of Bipartite Graphs.
ICTCS
Tiziana Calamoneri, Mattia Gastaldello, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2016 C conf
On Maximal Chain Subgraphs and Covers of Bipartite Graphs.
IWOCA
Tiziana Calamoneri, Mattia Gastaldello, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri
2016 J jnl
Pairwise Compatibility Graphs: A Survey.
SIAM Rev.
Tiziana Calamoneri, Blerina Sinaimeri
2016 — conf
Robustness of the Parsimonious Reconciliation Method in Cophylogeny.
AlCoB
Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot
2015 J jnl
Computing an Evolutionary Ordering is Hard.
Electron. Notes Discret. Math.
Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri
2015 J jnl
EUCALYPT: efficient tree reconciliation enumerator.
Algorithms Mol. Biol.
Beatrice Donati, Christian Baudet, Blerina Sinaimeri, Pierluigi Crescenzi, Marie-France Sagot
2015 J jnl
On Pairwise Compatibility of Some Graph (Super)Classes.
CoRR
Tiziana Calamoneri, Blerina Sinaimeri, Mattia Gastaldello
2014 J jnl
Computing an Evolutionary Ordering is Hard.
CoRR
Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri
2014 C conf
Navigating in a Sea of Repeats in RNA-seq without Drowning.
WABI
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2014 J jnl
Navigating in a sea of repeats in RNA-seq without drowning.
CoRR
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2014 J jnl
Pairwise Compatibility Graphs of Caterpillars.
Comput. J.
Tiziana Calamoneri, Antonio Frangioni, Blerina Sinaimeri
2014 — conf
Relating threshold tolerance graphs to other graph classes.
ICTCS
Tiziana Calamoneri, Blerina Sinaimeri
2013 J jnl
All Graphs with at Most Seven Vertices are Pairwise Compatibility Graphs.
Comput. J.
Tiziana Calamoneri, Dario Frascaria, Blerina Sinaimeri
2013 J jnl
Exploring pairwise compatibility graphs.
Theor. Comput. Sci.
Tiziana Calamoneri, Eugenio Montefusco, Rossella Petreschi, Blerina Sinaimeri
2013 J jnl
On the Pairwise Compatibility Property of some Superclasses of Threshold Graphs.
Discret. Math. Algorithms Appl.
Tiziana Calamoneri, Rossella Petreschi, Blerina Sinaimeri
2012 J jnl
All graphs with at most seven vertices are Pairwise Compatibility Graphs
CoRR
Tiziana Calamoneri, Dario Frascaria, Blerina Sinaimeri
2012 B conf
On Relaxing the Constraints in Pairwise Compatibility Graphs.
WALCOM
Tiziana Calamoneri, Rossella Petreschi, Blerina Sinaimeri
2011 C conf
Labeling of Oriented Planar Graphs.
CTW
Tiziana Calamoneri, Blerina Sinaimeri
2011 J jnl
On relaxing the constraints in pairwise compatibility graphs
CoRR
Tiziana Calamoneri, Rossella Petreschi, Blerina Sinaimeri
2011 J jnl
Rainbow graph splitting.
Theor. Comput. Sci.
Angelo Monti, Blerina Sinaimeri
2011 J jnl
Reverse-free codes and permutations.
Electron. Notes Discret. Math.
Zoltán Füredi, Ida Kantor, Angelo Monti, Blerina Sinaimeri
2010 J jnl
On Reverse-Free Codes and Permutations.
SIAM J. Discret. Math.
Zoltán Füredi, Ida Kantor, Angelo Monti, Blerina Sinaimeri
2009 J jnl
On types of growth for graph-different permutations.
J. Comb. Theory A
János Körner, Gábor Simonyi, Blerina Sinaimeri
2007 J jnl
On Cancellative Set Families.
Comb. Probab. Comput.
János Körner, Blerina Sinaimeri
2007 J jnl
On types of growth for graph-different permutations
CoRR
János Körner, Gábor Simonyi, Blerina Sinaimeri