Björn Wallner

21 papers Journal 21
YearRankTypeTitle / Venue / Authors
2024 J jnl
DockQ v2: improved automatic quality measure for protein multimers, nucleic acids, and small molecules.
Bioinform.
Claudio Mirabello, Björn Wallner
2024 J jnl
MassiveFold: unveiling AlphaFold's hidden potential with optimized and parallelized massive sampling.
Nat. Comput. Sci.
Nessim Raouraoua, Claudio Mirabello, Thibaut Véry, Christophe Blanchet, Björn Wallner, Marc F. Lensink, Guillaume Brysbaert
2023 J jnl
AFsample: improving multimer prediction with AlphaFold using massive sampling.
Bioinform.
Björn Wallner
2023 J jnl
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
Nucleic Acids Res.
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
2022 J jnl
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling.
Frontiers Bioinform.
Isak Johansson-Åkhe, Björn Wallner
2022 J jnl
InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol.
Bioinform.
Isak Johansson-Åkhe, Björn Wallner
2021 J jnl
InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network.
Frontiers Bioinform.
Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner
2020 J jnl
InterLig: improved ligand-based virtual screening using topologically independent structural alignments.
Bioinform.
Claudio Mirabello, Björn Wallner
2020 J jnl
InterPep2: global peptide-protein docking using interaction surface templates.
Bioinform.
Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner
2018 J jnl
Topology independent structural matching discovers novel templates for protein interfaces.
Bioinform.
Claudio Mirabello, Björn Wallner
2017 J jnl
ProQ3D: improved model quality assessments using deep learning.
Bioinform.
Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson
2017 J jnl
Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins.
J. Comput. Aided Mol. Des.
Sankar Basu, Fredrik Söderquist, Björn Wallner
2016 J jnl
Finding correct protein-protein docking models using ProQDock.
Bioinform.
Sankar Basu, Björn Wallner
2016 J jnl
ProQ2: estimation of model accuracy implemented in Rosetta.
Bioinform.
Karolis Uziela, Björn Wallner
2014 J jnl
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling.
Bioinform.
Björn Wallner
2012 J jnl
Improved model quality assessment using ProQ2.
BMC Bioinform.
Arjun Ray, Erik Lindahl, Björn Wallner
2011 J jnl
Improved predictions by Pcons.net using multiple templates.
Bioinform.
Per Larsson, Marcin J. Skwark, Björn Wallner, Arne Elofsson
2010 J jnl
Model quality assessment for membrane proteins.
Bioinform.
Arjun Ray, Erik Lindahl, Björn Wallner
2010 J jnl
Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4.
J. Chem. Inf. Model.
Edward J. Bertaccini, Björn Wallner, James R. Trudell, Erik Lindahl
2007 J jnl
Pcons.net: protein structure prediction meta server.
Nucleic Acids Res.
Björn Wallner, Per Larsson, Arne Elofsson
2005 J jnl
Pcons5: combining consensus, structural evaluation and fold recognition scores.
Bioinform.
Björn Wallner, Arne Elofsson