Björn Sommer - RankMe

64 papers C 2Journal 35Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Sustainable software development in science - insights from 20 years of Vanted. J. Integr. Bioinform. Falk Schreiber, Tobias Czauderna, Dimitar Garkov, Niklas Gröne, Karsten Klein, Matthias Lange, Uwe Scholz, Björn Sommer
2024	J	`jnl`	International symposium on integrative bioinformatics 2024 - editorial. J. Integr. Bioinform. Can Türker, Christian Panse, Björn Sommer, Marcel Friedrichs, Ralf Hofestädt
2024	J	`jnl`	Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2023	J	`jnl`	APL@voro - interactive visualization and analysis of cell membrane simulations. Bioinform. Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer
2023	J	`jnl`	Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023). Comput. Graph. Jan Byska, Michael Krone, Björn Sommer
2023	J	`jnl`	Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2023	—	`ed.`	Workshop on Molecular Graphics and Visual Analysis of Molecular Data 2023, MolVA@EuroVis 2023, Leipzig, Germany, June 12, 2023 MolVA@EuroVis Jan Byska, Michael Krone, Björn Sommer
2022	J	`jnl`	Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. J. Integr. Bioinform. Björn Sommer, Daisuke Inoue, Marc Baaden
2022	—	`ed.`	Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2022, Vienna, Austria, September 22-23, 2022 VCBM Renata G. Raidou, Björn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu
2022	J	`jnl`	Foreword. Comput. Graph. Kay Nieselt, Steffen Oeltze-Jafra, Thomas Schultz, Noeska N. Smit, Björn Sommer
2022	J	`jnl`	Immersive Analytics with Abstract 3D Visualizations: A Survey. Comput. Graph. Forum Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber
2021	—	`ed.`	11th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2021, Paris, France, September 22-24, 2021 VCBM Steffen Oeltze-Jafra, Noeska N. Smit, Björn Sommer, Kay Nieselt, Thomas Schultz
2021	—	`conf`	32nd Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
2021	—	`ed.`	4th Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVa@EuroVis 2021, Virtual Event, Switzerland, June 14, 2021 MolVa@EuroVis Jan Byska, Michael Krone, Björn Sommer
2021	—	`conf`	Hybrid Stereoscopic Photography - Analogue Stereo Photography meets the Digital Age with the StereoCompass app. SD&A Björn Sommer
2021	J	`jnl`	Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2021	J	`jnl`	TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour. J. Vis. Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber
2020	—	`conf`	31st Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
2020	—	`ed.`	3rd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@Eurographics/EuroVis 2020, Norrköping, Sweden, May 25, 2020 [online only] MolVa@Eurographics/EuroVis Jan Byska, Michael Krone, Björn Sommer
2020	—	`conf`	Immersive Design Engineering. SD&A Björn Sommer, Chang Hee Lee, Nat Martin, Vanna Savina Torrisi
2020	J	`jnl`	Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2020	—	`conf`	The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor. MolVa@Eurographics/EuroVis Beatrice Giuliari, Manuel Kösters, Jan Zhou, Tim Dingersen, André J. Heissmann, Ralf Rotzoll, Jens Krüger, Alejandro Giorgetti, Björn Sommer
2019	—	`ed.`	2nd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@EuroVis 2019, Porto, Portugal, June 3, 2019 MolVa@EuroVis Jan Byska, Michael Krone, Björn Sommer
2019	—	`conf`	30th Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
2019	J	`jnl`	JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
2019	J	`jnl`	Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2019	C	`conf`	TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data. VINCI Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber
2019	J	`jnl`	The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development. J. Integr. Bioinform. Björn Sommer
2019	—	`conf`	Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation. SD&A Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber
2018	—	`ed.`	1st Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@EuroVis 2018, Brno, Czech Republic, June 4, 2018 MolVa@EuroVis Jan Byska, Michael Krone, Björn Sommer
2018	C	`conf`	3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender. VINCI Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer
2018	J	`jnl`	Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility. CoRR Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer
2018	—	`conf`	Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction. UMAP (Adjunct Publication) Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer
2018	J	`jnl`	From Virtual Reality to Immersive Analytics in Bioinformatics. J. Integr. Bioinform. Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods
2018	J	`jnl`	Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer
2018	—	`ch.`	Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber
2018	J	`jnl`	Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2018	—	`conf`	Stereoscopic Displays and Applications XXIX - Introduction. SD&A Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
2018	—	`conf`	Virtual Reality for Sensor Data Visualization and Analysis. ERVR Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer
2017	—	`conf`	3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber
2017	J	`jnl`	Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
2017	—	`conf`	Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors. VCBM Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber
2017	J	`jnl`	Integration and virtual reality exploration of biomedical data with CmPI and VANTED. it Inf. Technol. Björn Sommer, Falk Schreiber
2016	—	`conf`	Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation. BDVA Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang
2016	J	`jnl`	DaTo: an atlas of biological databases and tools. J. Integr. Bioinform. Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen
2016	J	`jnl`	Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2016	—	`conf`	Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber
2016	J	`jnl`	Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. J. Integr. Bioinform. Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer
2015	—	`conf`	Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques. BDVA Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber
2015	J	`jnl`	Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise
2014	—	`conf`	Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. VCBM Thomas Waltemate, Björn Sommer, Mario Botsch
2014	J	`jnl`	Membrane simulation analysis using Voronoi tessellation. J. Cheminformatics Gunther Lukat, Björn Sommer, Jens Krüger
2014	—	`ch.`	Network Analysis and Integration in a Virtual Cell Environment. Approaches in Integrative Bioinformatics Björn Sommer
2014	J	`jnl`	Stereoscopic cell visualization: from mesoscopic to molecular scale. J. Electronic Imaging Björn Sommer, Christian Bender, Tobias Hoppe, Christian Gamroth, Lukas Jelonek
2013	J	`jnl`	APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. J. Chem. Inf. Model. Gunther Lukat, Jens Krüger, Björn Sommer
2013	—	`—`	CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional level. Björn Sommer
2013	J	`jnl`	Editorial. J. Integr. Bioinform. Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise
2013	J	`jnl`	Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2012	J	`jnl`	The GMX-Plugin for the CELLmicrocosmos MembraneEditor. J. Cheminformatics Sebastian Rubert, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Alexander Schäfer, Jens Krüger, Björn Sommer
2011	J	`jnl`	CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. J. Chem. Inf. Model. Björn Sommer, Tim Dingersen, Christian Gamroth, Sebastian E. Schneider, Sebastian Rubert, Jens Krüger, Karl-Josef Dietz
2011	J	`jnl`	Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes. J. Cheminformatics Björn Sommer, Tim Dingersen, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Sebastian Rubert, Alexander Schäfer, Jens Krüger
2010	J	`jnl`	CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes. J. Cheminformatics Björn Sommer, Tim Dingersen, Sebastian E. Schneider, Sebastian Rubert, Christian Gamroth
2010	—	`conf`	CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. BIOINFORMATICS Björn Sommer, Jörn Künsemöller, Norbert Sand, Arne Husemann, Madis Rumming, Benjamin Kormeier
2010	J	`jnl`	Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt