Bjarni V. Halldórsson

46 papers A 1B 4C 3Misc 1Journal 30Unranked 7

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	GGTyper: genotyping complex structural variants using short-read sequencing data. Bioinform. Tim Mirus, Robert Lohmayer, Clementine Döhring, Bjarni V. Halldórsson, Birte Kehr
2023	J	`jnl`	NCOurd: modelling length distributions of NCO events and gene conversion tracts. Bioinform. Marteinn T. Hardarson, Gunnar Palsson, Bjarni V. Halldórsson
2022	J	`jnl`	Population-scale detection of non-reference sequence variants using colored de Bruijn graphs. Bioinform. Thomas Krannich, W. Timothy J. White, Sebastian Niehus, Guillaume Holley, Bjarni V. Halldórsson, Birte Kehr
2021	J	`jnl`	Local improvement algorithms for a path packing problem: A performance analysis based on linear programming. Oper. Res. Lett. Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie
2021	J	`jnl`	read_haps: using read haplotypes to detect same species contamination in DNA sequences. Bioinform. Hannes P. Eggertsson, Bjarni V. Halldórsson
2020	J	`jnl`	popSTR2 enables clinical and population-scale genotyping of microsatellites. Bioinform. Snædís Kristmundsdóttir, Hannes P. Eggertsson, Gudny A. Arnadottir, Bjarni V. Halldórsson
2019	J	`jnl`	A Branch & Price algorithm for the minimum cost clique cover problem in max-point tolerance graphs. 4OR Luciano Porretta, Daniele Catanzaro, Bjarni V. Halldórsson, Bernard Fortz
2019	J	`jnl`	Clinical decision support system for the management of osteoporosis compared to NOGG guidelines and an osteology specialist: a validation pilot study. BMC Medical Informatics Decis. Mak. Haukur Tyr Gudmundsson, Karen E. Hansen, Bjarni V. Halldórsson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
2017	J	`jnl`	Corrigendum to "A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis". Comput. Math. Methods Medicine Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
2017	J	`jnl`	Max point-tolerance graphs. Discret. Appl. Math. Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho
2017	J	`jnl`	popSTR: population-scale detection of STR variants. Bioinform. Snædís Kristmundsdóttir, Brynja D. Sigurpálsdóttir, Birte Kehr, Bjarni V. Halldórsson
2016	J	`jnl`	PopIns: population-scale detection of novel sequence insertions. Bioinform. Birte Kehr, Páll Melsted, Bjarni V. Halldórsson
2016	J	`jnl`	Streaming Algorithms for Independent Sets in Sparse Hypergraphs. Algorithmica Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy
2016	J	`jnl`	The minimum vulnerability problem on specific graph classes. J. Comb. Optim. Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou
2015	J	`jnl`	A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis. Comput. Math. Methods Medicine Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
2015	J	`jnl`	Max Point-Tolerance Graphs. CoRR Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho
2014	J	`jnl`	KmerStream: streaming algorithms for Bioinform. Páll Melsted, Bjarni V. Halldórsson
2014	C	`conf`	The Minimum Vulnerability Problem on Graphs. COCOA Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou
2013	J	`jnl`	An Integer Programming Formulation of the Parsimonious Loss of Heterozygosity Problem. IEEE ACM Trans. Comput. Biol. Bioinform. Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
2013	J	`jnl`	Estimating population size via line graph reconstruction. Algorithms Mol. Biol. Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
2012	—	`conf`	A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem. ISBRA Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
2012	J	`jnl`	DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinform. Derek Aguiar, Bjarni V. Halldórsson, Eric M. Morrow, Sorin Istrail
2012	C	`conf`	Estimating Population Size via Line Graph Reconstruction. WABI Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
2012	—	`conf`	Invited: Algorithmic challenges in DNA sequencing and disease association. ICCABS Bjarni V. Halldórsson
2012	J	`jnl`	PAIR: polymorphic Alu insertion recognition. BMC Bioinform. Jón Sveinbjörnsson, Bjarni V. Halldórsson
2011	J	`jnl`	An Algorithm for Detecting High Frequency Copy Number Polymorphisms Using SNP Arrays. J. Comput. Biol. Bjarni V. Halldórsson, Daniel Gudbjartsson
2011	Misc	`conf`	Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. Pacific Symposium on Biocomputing Bjarni V. Halldórsson, Derek Aguiar, Sorin Istrail
2011	J	`jnl`	The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. J. Comput. Biol. Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
2010	J	`jnl`	Crucial abelian k-power-free words. Discret. Math. Theor. Comput. Sci. Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
2010	J	`jnl`	On shortest crucial words avoiding abelian powers. Discret. Appl. Math. Sergey V. Avgustinovich, Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
2010	—	`conf`	Streaming Algorithms for Independent Sets. ICALP (1) Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy
2010	B	`conf`	The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. RECOMB Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
2009	C	`conf`	Crucial Words for Abelian Powers. Developments in Language Theory Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
2006	J	`jnl`	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. J. Comput. Biol. Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
2006	J	`jnl`	Islands of Tractability for Parsimony Haplotyping. IEEE ACM Trans. Comput. Biol. Bioinform. Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
2005	B	`conf`	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. RECOMB Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
2005	—	`conf`	Islands of Tractability for Parsimony Haplotyping. CSB Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
2003	J	`jnl`	Approximation algorithms for the test cover problem. Math. Program. Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie
2003	—	`conf`	Combinatorial Problems Arising in SNP and Haplotype Analysis. DMTCS Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
2003	—	`conf`	Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail
2003	B	`conf`	Haplotypes and informative SNP selection algorithms: don't block out information. RECOMB Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail
2003	J	`jnl`	Robustness of Inference of Haplotype Block Structure. J. Comput. Biol. Russell Schwartz, Bjarni V. Halldórsson, Vineet Bafna, Andrew G. Clark, Sorin Istrail
2002	—	`conf`	A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
2002	J	`jnl`	Optimal Sequencing by Hybridization in Rounds. J. Comput. Biol. Alan M. Frieze, Bjarni V. Halldórsson
2001	A	`conf`	On the Approximability of the Minimum Test Collection Problem. ESA Bjarni V. Halldórsson, Magnús M. Halldórsson, R. Ravi
2001	B	`conf`	Optimal sequencing by hybridization in rounds. RECOMB Alan M. Frieze, Bjarni V. Halldórsson