Bichar Dip Shrestha Gurung

21 papers Journal 3Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A Physics-First, Physics-Gated AI Framework for Verifiable Biofilm Sensing. BIBM Caine K. Shagla, Manoj Tripathi, Bichar Dip Shrestha Gurung, Etienne Gnimpieba Zohim, Venkataramana Gadhamshetty
2025	—	`conf`	Digital Biomonitoring of Microbial Communities: a Phenotype Feature-driven AutoML Framework for Bacteria Classification. BIBM Rupesh Kumar Yadav, Shiva Aryal, Bichar Dip Shrestha Gurung, Dikshya Bhandari, Graham Hartman, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2025	—	`conf`	Digital Twin Forecasting of Quorum-Sensing Associated Biofilm Microorganisms in Urban Wastewater Over a 30-Week Interval. BIBM Bichar Dip Shrestha Gurung, Tuyen Do, Shiva Aryal, Naina Maharjan, Dikshya Bhandari, Bipul Bhattarai, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2025	—	`conf`	Dimensional Reprojection and Sequential Modeling with Transformer Integration for Interesting Gene and Protein Recognition. BIBM Alain Bertrand Bomgni, Feuzing Ntemma Donald, Shiva Aryal, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim
2025	—	`conf`	Functional Biofilm-Associated Microbial Markers in a Colorectal Cancer Cohort: Evidence for Quorum Sensing, Exopolysaccharide Production, and Biofilm-Driven Pathogenesis. BIBM Grace Goeden, Tuyen Do, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2025	—	`conf`	Metagenomic Functional Signatures for Real-Time Predictive Monitoring of Cyanobacterial Bloom Assessment and Biofilm Marker Discovery in Managed Freshwater Systems. BIBM Tuyen Do, Naina Maharjan, Connor Johansen-Sallee, Bichar Dip Shrestha Gurung, Paula Mazzer, Etienne Z. Gnimpieba
2025	—	`conf`	Toward Autonomous Biofilm Engineering: A Vision for a Digital Twin-Based Lab Automation. BIBM Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2024	—	`conf`	Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data. BIBM Corey Zhao, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Mariah M. Hoffman, Etienne Z. Gnimpieba
2024	J	`jnl`	Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. Briefings Bioinform. Etienne Z. Gnimpieba, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough
2024	J	`jnl`	Comparative Study of Domain Driven Terms Extraction Using Large Language Models. CoRR Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba
2024	—	`conf`	Efficient Prediction of Protein-Ligand Binding Using ESM-2 and Mol2vec with Random Forest Model. BIBM Bichar Dip Shrestha Gurung, Manish Rayamajhi, Anushuya Baidya, Owen Growney, Helena Naomie Dongmo Mafo, Yun-Seok Choi, Etienne Z. Gnimpieba
2024	—	`conf`	Enhancing Sulphate Reducing Bacteria Clustering by Implementing UMAP on Raman Spectroscopy Data. BIBM Md Hasanur Rahman, Bichar Dip Shrestha Gurung, Manoj Tripathi, Alan Dalton, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2024	J	`jnl`	Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. CoRR Shiva Aryal, Tuyen Do, Bisesh Heyojoo, Sandeep Chataut, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2024	—	`conf`	NFB-Checker: An AI/ML-Powered Microorganism Nitrogen Fixation Susceptibility Prediction from Gene Collection. BIBM Tuyen Do, Shiva Aryal, Bichar Dip Shrestha Gurung, Diing D. M. Agany, Nick Klein, Ruanbao Zhou, Rajesh Kumar Sani, Etienne Z. Gnimpieba
2023	—	`conf`	Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. BIBM Ramesh Devadig, Bichar Dip Shrestha Gurung, Etienne Z. Gnimpieba, Bharat Jasthi, Venkataramana Gadhamshetty
2023	—	`conf`	Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. BIBM Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2023	—	`conf`	SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. BIBM Sam Haas, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Etienne Z. Gnimpieba
2023	—	`conf`	Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. BIBM Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2023	—	`conf`	Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. BIBM Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba
2022	—	`conf`	U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. BIBM Bichar Dip Shrestha Gurung, Ramesh Devadig, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2022	—	`conf`	Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. BIBM Sam Haas, Timothy W. Hartman, Bichar Dip Shrestha Gurung, Tuyen Do, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba