Bianca Habermann

14 papers Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
MechanoProDB: a web-based database for exploring the mechanical properties of proteins.
Database J. Biol. Databases Curation
Ismahene Mesbah, Bianca Habermann, Felix Rico
2023 J jnl
Phasik: a Python package to identify system states in partially temporal networks.
J. Open Source Softw.
Maxime Lucas, Alex Townsend-Teague, Matteo Neri, Simone Poetto, Arthur Morris, Bianca Habermann, Laurent Tichit
2018 J jnl
Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB).
BMC Bioinform.
Rasmus Krempel, Pranav Kulkarni, Annie Yim, Ulrich Lang, Bianca Habermann, Peter Frommolt
2018 J jnl
SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data.
BMC Bioinform.
Roman Prytuliak, Friedhelm Pfeiffer, Bianca Habermann
2017 J jnl
HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons.
Nucleic Acids Res.
Roman Prytuliak, Michael Volkmer, Markus Meier, Bianca Habermann
2015 J jnl
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.
Database J. Biol. Databases Curation
Jose M. Villaveces, Rafael C. Jiménez, Pablo Porras, Noemi del-Toro, Margaret J. Duesbury, Marine Dumousseau, Sandra E. Orchard, H. Choi, Peipei Ping, N. C. Zong, Manor Askenazi, Bianca Habermann, Henning Hermjakob
2014 J jnl
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.
BMC Bioinform.
Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann
2013 J jnl
Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema.
PLoS Comput. Biol.
Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey
2010 J jnl
SeLOX - a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems.
Nucleic Acids Res.
Vineeth Surendranath, Janet Chusainow, Joachim Hauber, Frank Buchholz, Bianca Habermann
2009 J jnl
A user-centred evaluation framework for the Sealife semantic web browsers.
BMC Bioinform.
Helen Oliver, Gayo Diallo, Ed de Quincey, Dimitra Alexopoulou, Bianca Habermann, Patty Kostkova, Michael Schroeder, Simon Jupp, Khaled Khelif, Robert Stevens, Gawesh Jawaheer, Gemma Madle
2009 — conf
Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing?
Web Intelligence/IAT Workshops
Ed de Quincey, Helen Oliver, Patty Kostkova, Gawesh Jawaheer, Gemma Madle, Gayo Diallo, Dimitra Alexopoulou, Michael Schroeder, Bianca Habermann, Khaled Khelif, Simon Jupp, Robert Stevens
2006 J jnl
ProFAT: a web-based tool for the functional annotation of protein sequences.
BMC Bioinform.
Charles Richard Bradshaw, Vineeth Surendranath, Bianca Habermann
2006 — conf
Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases.
HealthGrid
Michael Schroeder, Albert Burger, Patty Kostkova, Robert Stevens, Bianca Habermann, Rose Dieng-Kuntz
2004 J jnl
DEQOR: a web-based tool for the design and quality control of siRNAs.
Nucleic Acids Res.
Andreas Henschel, Frank Buchholz, Bianca Habermann