Berthold Göttgens

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2025 J jnl
diffGEK: differential gene expression kinetics.
Bioinform.
Melania Barile, Shirom Chabra, Tomoya Isobe, Berthold Göttgens
2019 J jnl
A single-cell molecular map of mouse gastrulation and early organogenesis.
Nat.
Blanca Pijuan-Sala, Jonathan A. Griffiths, Carolina Guibentif, Tom W. Hiscock, Wajid Jawaid, Fernando J. Calero-Nieto, Carla Mulas, Ximena Ibarra-Soria, Richard C. V. Tyser, Debbie Lee Lian Ho, Wolf Reik, Shankar Srinivas, Benjamin D. Simons, Jennifer Nichols, John C. Marioni, Berthold Göttgens
2019 J jnl
Decoding human fetal liver haematopoiesis.
Nat.
Dorin-Mirel Popescu, Rachel A. Botting, Emily Stephenson, Kile Green, Simone Webb, Laura Jardine, Emily F. Calderbank, Krzysztof Polanski, Issac Goh, Mirjana Efremova, Meghan Acres, Daniel Maunder, Peter Vegh, Yorick Gitton, Jong-Eun Park, Roser Vento-Tormo, Zhichao Miao, David Dixon, Rachel Rowell, David McDonald, James Fletcher, Elizabeth Poyner, Gary Reynolds, Michael Mather, Corina Moldovan, Lira Mamanova, Frankie Greig, Matthew D. Young, Kerstin B. Meyer, Steven Lisgo, Jaume Bacardit, Andrew Fuller, Ben Millar, Barbara Innes, Susan Lindsay, Michael J. T. Stubbington, Monika S. Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L. Tickle, Michal Slyper, Orit Rozenblatt-Rosen, Andrew Filby, Peter Carey, Alexandra-Chloé Villani, Anindita Roy, Aviv Regev, Alain Chédotal, Irene Roberts, Berthold Göttgens, Sam Behjati, Elisa Laurenti, Sarah A. Teichmann, Muzlifah Haniffa
2019 J jnl
Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets.
PLoS Comput. Biol.
M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A.-Ling, Berthold Göttgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead
2018 J jnl
A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.
Briefings Bioinform.
Felicia S. L. Ng, David Ruau, Lorenz Wernisch, Berthold Göttgens
2018 J jnl
SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data.
BMC Syst. Biol.
Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher
2016 J jnl
BTR: training asynchronous Boolean models using single-cell expression data.
BMC Bioinform.
Chee Yee Lim, Huange Wang, Steven Woodhouse, Nir Piterman, Lorenz Wernisch, Jasmin Fisher, Berthold Göttgens
2016 J jnl
Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data.
PLoS Comput. Biol.
Daphne Ezer, Victoria Moignard, Berthold Göttgens, Boris Adryan
2015 J jnl
CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.
Nucleic Acids Res.
Manuel Sánchez-Castillo, David Ruau, Adam C. Wilkinson, Felicia S. L. Ng, Rebecca Hannah, Evangelia Diamanti, Patrick Lombard, Nicola K. Wilson, Berthold Göttgens
2014 J jnl
Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data.
Bioinform.
Florian Buettner, Victoria Moignard, Berthold Göttgens, Fabian J. Theis
2014 J jnl
TRES predicts transcription control in embryonic stem cells.
Bioinform.
Christopher Pooley, David Ruau, Patrick Lombard, Berthold Göttgens, Anagha Joshi
2013 J jnl
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.
Bioinform.
Nicola Bonzanni, Abhishek Garg, K. Anton Feenstra, Judith Schütte, Sarah Kinston, Diego Miranda-Saavedra, Jaap Heringa, Ioannis Xenarios, Berthold Göttgens
2010 J jnl
Modeling Reveals Bistability and Low-Pass Filtering in the Network Module Determining Blood Stem Cell Fate.
PLoS Comput. Biol.
Jatin Narula, Aileen M. Smith, Berthold Göttgens, Oleg A. Igoshin
2009 J jnl
BloodExpress: a database of gene expression in mouse haematopoiesis.
Nucleic Acids Res.
Diego Miranda-Saavedra, Subhajyoti De, Matthew W. B. Trotter, Sarah A. Teichmann, Berthold Göttgens
2006 J jnl
TFBScluster web server for the identification of mammalian composite regulatory elements.
Nucleic Acids Res.
Ian John Donaldson, Berthold Göttgens
2005 J jnl
TFBScluster: a resource for the characterization of transcriptional regulatory networks.
Bioinform.
Ian John Donaldson, Michael Chapman, Berthold Göttgens
2003 J jnl
Fast and sensitive multiple alignment of large genomic sequences.
BMC Bioinform.
Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern