Bernd W. Brandt

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2024 J jnl
A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches.
BMC Bioinform.
Vincent Y. Pappalardo, Leyla Azarang, Egija Zaura, Bernd W. Brandt, Renée X. de Menezes
2016 J jnl
metaModules identifies key functional subnetworks in microbiome-related disease.
Bioinform.
Ali May, Bernd W. Brandt, Mohammed El-Kebir, Gunnar W. Klau, Egija Zaura, Wim Crielaard, Jaap Heringa, Sanne Abeln
2015 J jnl
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.
Nucleic Acids Res.
Ali May, Sanne Abeln, Mark J. Buijs, Jaap Heringa, Wim Crielaard, Bernd W. Brandt
2014 J jnl
A web server for protein-protein interaction network querying.
BMC Syst. Biol.
Mohammed El-Kebir, Bernd W. Brandt, Jaap Heringa, Gunnar W. Klau
2014 J jnl
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations.
Bioinform.
Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa, Bernd W. Brandt
2013 J jnl
Towards a database for genotype-phenotype association research: mining data from encyclopaedia.
Int. J. Data Min. Bioinform.
Vesna Pajic, Gordana Pavlovic-Lazetic, Milos V. Beljanski, Bernd W. Brandt, Milos Pajic
2012 J jnl
Comparing clustering and pre-processing in taxonomy analysis.
Bioinform.
Marc J. Bonder, Sanne Abeln, Egija Zaura, Bernd W. Brandt
2012 J jnl
TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage.
Nucleic Acids Res.
Bernd W. Brandt, Marc J. Bonder, Susan M. Huse, Egija Zaura
2011 J jnl
Protein analysis tools and services at IBIVU.
J. Integr. Bioinform.
Bernd W. Brandt, Jaap Heringa
2010 J jnl
Multi-Harmony: detecting functional specificity from sequence alignment.
Nucleic Acids Res.
Bernd W. Brandt, K. Anton Feenstra, Jaap Heringa
2009 J jnl
PhyloPars: estimation of missing parameter values using phylogeny.
Nucleic Acids Res.
Jorn Bruggeman, Jaap Heringa, Bernd W. Brandt
2009 J jnl
webPRC: the Profile Comparer for alignment-based searching of public domain databases.
Nucleic Acids Res.
Bernd W. Brandt, Jaap Heringa
2008 J jnl
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
Nucleic Acids Res.
Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt
2008 J jnl
SEQATOMS: a web tool for identifying missing regions in PDB in sequence context.
Nucleic Acids Res.
Bernd W. Brandt, Jaap Heringa, Jack A. M. Leunissen