Bernard J. Pope

17 papers C 2Journal 10Unranked 4
YearRankTypeTitle / Venue / Authors
2020 J jnl
HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data.
SoftwareX
Michael G. Leeming, Andrew Paul Isaac, Luke Zappia, Richard A. J. O'hair, William A. Donald, Bernard J. Pope
2017 J jnl
Best practice data life cycle approaches for the life sciences.
F1000Research
Philippa C. Griffin, Jyoti Khadake, Kate S. LeMay, Suzanna E. Lewis, Sandra E. Orchard, Andrew Pask, Bernard J. Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew E. Treloar, Sonika Tyagi, Jeffrey H. Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B. Hangartner, Helen L. Hayden, William W. H. Ho, Gabriel Keeble-Gagnère, Pasi K. Korhonen, Peter Neish, Priscilla R. Prestes, Mark F. Richardson, Nathan S. Watson-Haigh, Kelly L. Wyres, Neil D. Young, Maria Victoria Schneider
2017 J jnl
Four simple recommendations to encourage best practices in research software.
F1000Research
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluís Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
2016 J jnl
MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.
BMC Bioinform.
Nicholas C. Wong, Bernard J. Pope, Ida L. Candiloro, Darren Korbie, Matt Trau, Stephen Q. Wong, Thomas Mikeska, Xinmin Zhang, Mark Pitman, Stefanie Eggers, Stephen R. Doyle, Alexander Dobrovic
2016 J jnl
UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
BMC Bioinform.
Daniel J. Park, Roger Li, Edmund Lau, Peter Georgeson, Tu Nguyen-Dumont, Bernard J. Pope
2014 J jnl
Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database.
Source Code Biol. Medicine
Daniel J. Park, Tu Nguyen-Dumont, Sori Kang, Karin Verspoor, Bernard J. Pope
2014 J jnl
ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets.
Source Code Biol. Medicine
Bernard J. Pope, Tu Nguyen-Dumont, Fleur Hammet, Daniel J. Park
2013 J jnl
FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets.
BMC Bioinform.
Bernard J. Pope, Tu Nguyen-Dumont, Fabrice Odefrey, Russell Bell, Sean V. Tavtigian, David E. Goldgar, Andrew Lonie, Melissa C. Southey, Daniel J. Park
2012 J jnl
Bpipe: a tool for running and managing bioinformatics pipelines.
Bioinform.
Simon P. Sadedin, Bernard J. Pope, Alicia Oshlack
2011 J jnl
Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation.
IEEE Trans. Biomed. Eng.
Bernard J. Pope, Blake G. Fitch, Michael Pitman, John Jeremy Rice, Matthias Reumann
2011 — conf
Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models.
EMBC
Bernard J. Pope, Blake G. Fitch, Michael C. Pitman, John Jeremy Rice, Matthias Reumann
2007 — —
A declarative debugger for Haskell.
Bernard J. Pope
2007 C conf
A lightweight interactive debugger for haskell.
Haskell
Simon Marlow, José Iborra, Bernard J. Pope, Andy Gill
2004 — conf
Declarative Debugging with Buddha.
Advanced Functional Programming
Bernard J. Pope
2003 — conf
A Program Transformation for Debugging Haskell 98.
ACSC
Bernard J. Pope, Lee Naish
2003 C conf
Practical aspects of declarative debugging in Haskell 98.
PPDP
Bernard J. Pope, Lee Naish
2001 — conf
Specialisation of Higher-Order Functions for Debugging.
WFLP
Bernard J. Pope, Lee Naish