Bernard de Bono

25 papers B 1Journal 16Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Developing a multiscale neural connectivity knowledgebase of the autonomic nervous system. Frontiers Neuroinformatics Fahim T. Imam, Thomas H. Gillespie, Ilias Ziogas, Monique Surles-Zeigler, Susan J. Tappan, Ibrahim Burak Özyurt, Jyl Boline, Bernard de Bono, Jeffrey S. Grethe, Maryann E. Martone
2025	J	`jnl`	Ontology Creation and Management Tools: the Case of Anatomical Connectivity. CoRR Natallia Kokash, Bernard de Bono, Tom Gillespie
2025	J	`jnl`	Ontology- and LLM-based Data Harmonization for Federated Learning in Healthcare. CoRR Natallia Kokash, Lei Wang, Thomas H. Gillespie, Adam Belloum, Paola Grosso, Sara K. Quinney, Lang Li, Bernard de Bono
2024	J	`jnl`	Layout of anatomical structures and blood vessels based on the foundational model of anatomy. J. Integr. Bioinform. Niklas Gröne, Benjamin Grüneisen, Karsten Klein, Bernard de Bono, Tobias Czauderna, Falk Schreiber
2022	—	`conf`	Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. ICBO Michelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White
2022	J	`jnl`	Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project. Frontiers Neuroinformatics Monique Surles-Zeigler, Troy Sincomb, Thomas H. Gillespie, Bernard de Bono, Jacqueline Bresnahan, Gary M. Mawe, Jeffrey S. Grethe, Susan J. Tappan, Maci L. Heal, Maryann E. Martone
2021	J	`jnl`	Knowledge Representation for Multi-Scale Physiology Route Modeling. Frontiers Neuroinformatics Natallia Kokash, Bernard de Bono
2019	J	`jnl`	Model annotation and discovery with the Physiome Model Repository. BMC Bioinform. Dewan M. Sarwar, Reza Kalbasi, John H. Gennari, Brian E. Carlson, Maxwell Lewis Neal, Bernard de Bono, Koray Atalag, Peter J. Hunter, David P. Nickerson
2017	J	`jnl`	Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson
2014	B	`conf`	ApiNATOMY: Towards Multiscale Views of Human Anatomy. IDA Bernard de Bono, Pierre Grenon, Michiel Helvensteijn, Joost N. Kok, Natallia Kokash
2014	—	`conf`	Computational horizons in cancer (CHIC): Developing meta- and hyper-multiscale models and repositories for in Silico Oncology - A brief technical outline of the project. IARWISOI Georgios S. Stamatakos, Dimitra D. Dionysiou, Fay Misichroni, Norbert M. Graf, Stefaan W. Van Gool, Rainer Bohle, Feng Dong, Marco Viceconti, Kostas Marias, Vangelis Sakkalis, Nikolaus Forgó, Ravi Radhakrishnan, Helen M. Byrne, Caterina Guiot, Philippe Büchler, Elias Neri, Anca I. D. Bucur, Bernard de Bono, Debora Testi, Manolis Tsiknakis
2014	—	`conf`	Template-based Treemaps to Preserve Spatial Constraints. IVAPP Natallia Kokash, Bernard de Bono, Joost N. Kok
2013	J	`jnl`	Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology. BMC Bioinform. Pierre Grenon, Bernard de Bono
2013	J	`jnl`	Functional tissue units and their primary tissue motifs in multi-scale physiology. J. Biomed. Semant. Bernard de Bono, Pierre Grenon, Richard A. Baldock, Peter Hunter
2013	J	`jnl`	HuPSON: the human physiology simulation ontology. J. Biomed. Semant. Michaela Gündel, Erfan Younesi, Ashutosh Malhotra, Jiali Wang, Hui Li, Bijun Zhang, Bernard de Bono, Heinz-Theodor Mevissen, Martin Hofmann-Apitius
2012	J	`jnl`	An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono
2011	—	`conf`	Achieving Semantic Interoperability between Physiology Models and Clinical Data. e-Science Workshops Bernard de Bono, Stephen John Sammut, Pierre Grenon
2011	—	`conf`	Bridging Multiple Ontologies: Representation of the Liver Immune Response. ICBO Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell
2011	J	`jnl`	Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos
2011	—	`conf`	Logic-Based Representation of Connectivity Routes in the Immune System. ICARIS Pierre Grenon, Bernard de Bono
2011	—	`conf`	Ontology-Strength Industry Standards: The Case of the Clinical Trial Domain. FOMI Pierre Grenon, Sarala M. Wimalaratne, Bernard de Bono
2009	J	`jnl`	Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani V. Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio
2007	J	`jnl`	Reactome: An integrated expert model of human molecular processes and access toolkit. J. Integr. Bioinform. Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
2006	—	`conf`	Reactome - A Knowledgebase of Biological Pathways. OTM Workshops (1) Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu
2005	J	`jnl`	Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, Gopal R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein