Berkin Bilgic - RankMe

55 papers B 2Misc 1Journal 43Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	FINDER: Zero-Shot Field-Integrated Network for Distortion-free EPI Reconstruction in Diffusion MRI. CoRR Namgyu Han, Seong Dae Yun, Chaeeun Lim, Sunghyun Seok, Sunju Kim, Yoonhwan Kim, Yohan Jun, Tae Hyung Kim, Berkin Bilgic, Jaejin Cho
2026	J	`jnl`	PRIME: Phase reversed interleaved multi-Echo acquisition enables highly accelerated distortion-corrected diffusion MRI. Medical Image Anal. Yohan Jun, Qiang Liu, Ting Gong, Jaejin Cho, Shohei Fujita, Xingwang Yong, Congyu Liao, Marianna E. Schmidt, Shahin Nasr, Camilo Jaimes, Michael S. Gee, Susie Yi Huang, Lipeng Ning, Anastasia Yendiki, Yogesh Rathi, Berkin Bilgic
2026	J	`jnl`	Rapid whole brain motion-robust mesoscale in-vivo MR imaging using multi-scale implicit neural representation. Medical Image Anal. Jun Lyu, Lipeng Ning, William Consagra, Qiang Liu, Richard J. Rushmore, Berkin Bilgic, Yogesh Rathi
2025	J	`jnl`	Deep learning water-unsuppressed MRSI at ultra-high field for simultaneous quantitative metabolic, susceptibility and myelin water imaging. CoRR Paul J. Weiser, Jiye Kim, Jongho Lee, Amirmohammad Shamaei, Gulnur Ungan, Malte Hoffmann, Antoine Klauser, Berkin Bilgic, Ovidiu C. Andronesi
2025	J	`jnl`	Explainable AI for Accelerated Microstructure Imaging: A SHAP-Guided Protocol on the Connectome 2.0 scanner. CoRR Quentin Uhl, Tommaso Pavan, Julianna Gerold, Kwok-Shing Chan, Yohan Jun, Shohei Fujita, Aneri Bhatt, Yixin Ma, Qiaochu Wang, Hong-Hsi Lee, Susie Yi Huang, Berkin Bilgic, Ileana Jelescu
2025	J	`jnl`	GACELLE: GPU-accelerated tools for model parameter estimation and image reconstruction. CoRR Kwok-Shing Chan, Hansol Lee, Yixin Ma, Berkin Bilgic, Susie Y. Huang, Hong-Hsi Lee, José P. Marques
2025	J	`jnl`	Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning. NeuroImage Qiyuan Tian, Chanon Ngamsombat, Hong-Hsi Lee, Daniel R. Berger, Yuelong Wu, Qiuyun Fan, Berkin Bilgic, Ziyu Li, Dmitry S. Novikov, Els Fieremans, Bruce R. Rosen, Jeff W. Lichtman, Susie Yi Huang
2025	J	`jnl`	Rapid Whole Brain Mesoscale In-vivo MR Imaging using Multi-scale Implicit Neural Representation. CoRR Jun Lyu, Lipeng Ning, William Consagra, Qiang Liu, Richard J. Rushmore, Berkin Bilgic, Yogesh Rathi
2024	J	`jnl`	Enhanced Partial Fourier MRI With Zero-Shot Deep Untrained Priors. IEEE Access So Hyun Kang, Jihoo Kim, Jaejin Cho, Clarissa Zimmerman Cooley, Amir Heydari, Berkin Bilgic, Tae Hyung Kim
2024	J	`jnl`	Mesoscale Brain Mapping: Bridging Scales and Modalities in Neuroimaging - A Symposium Review. Neuroinformatics Joshua K. Marchant, Natalie G. Ferris, Diana Grass, Magdelena S. Allen, Vivek Gopalakrishnan, Mark D. Olchanyi, Devang Sehgal, Maxina Sheft, Amelia Strom, Berkin Bilgic, Brian L. Edlow, Elizabeth M. C. Hillman, Meher R. Juttukonda, Laura Lewis, Shahin Nasr, Aapo Nummenmaa, Jonathan R. Polimeni, Roger B. H. Tootell, Lawrence L. Wald, Hui Wang, Anastasia Yendiki, Susie Yi Huang, Bruce R. Rosen, Randy L. Gollub
2024	J	`jnl`	NLCG-Net: A Model-Based Zero-Shot Learning Framework for Undersampled Quantitative MRI Reconstruction. CoRR Xinrui Jiang, Yohan Jun, Jaejin Cho, Mengze Gao, Xingwang Yong, Berkin Bilgic
2023	J	`jnl`	Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). Medical Image Anal. Ziyu Li, Qiuyun Fan, Berkin Bilgic, Guangzhi Wang, Wenchuan Wu, Jonathan R. Polimeni, Karla L. Miller, Susie Yi Huang, Qiyuan Tian
2023	J	`jnl`	High-fidelity mesoscale in-vivo diffusion MRI through gSlider-BUDA and circular EPI with S-LORAKS reconstruction. NeuroImage Congyu Liao, Uten Yarach, Xiaozhi Cao, Siddharth Srinivasan Iyer, Nan Wang, Tae Hyung Kim, Qiyuan Tian, Berkin Bilgic, Adam B. Kerr, Kawin Setsompop
2023	J	`jnl`	Improved Multi-Shot Diffusion-Weighted MRI with Zero-Shot Self-Supervised Learning Reconstruction. CoRR Jaejin Cho, Yohan Jun, Xiaoqing Wang, Caique Kobayashi, Berkin Bilgic
2023	—	`conf`	Improved Multi-shot Diffusion-Weighted MRI with Zero-Shot Self-supervised Learning Reconstruction. MICCAI (1) Jaejin Cho, Yohan Jun, Xiaoqing Wang, Caique Kobayashi, Berkin Bilgic
2023	J	`jnl`	SubZero: Subspace Zero-Shot MRI Reconstruction. CoRR Heng Yu, Jonathan I. Tamir, Berkin Bilgic
2022	J	`jnl`	Covariance-Free Sparse Bayesian Learning. IEEE Trans. Signal Process. Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
2022	Misc	`conf`	High-Dimensional Sparse Bayesian Learning without Covariance Matrices. ICASSP Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
2022	J	`jnl`	High-Dimensional Sparse Bayesian Learning without Covariance Matrices. CoRR Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
2022	—	`conf`	Liver-Buda-Sage: Simultaneous Whole Liver T2 and T*2 Mapping in one Breath-Hold. ISBI Zijing Zhang, Huihui Ye, Maosen Li, Huafeng Liu, Berkin Bilgic
2022	J	`jnl`	Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. NeuroImage Qiuyun Fan, Cornelius Eichner, Maryam Afzali, Lars Mueller, Chantal M. W. Tax, Mathias Davids, Mirsad Mahmutovic, Boris Keil, Berkin Bilgic, Kawin Setsompop, Hong-Hsi Lee, Qiyuan Tian, Chiara Maffei, Gabriel Ramos-Llordén, Aapo Nummenmaa, Thomas Witzel, Anastasia Yendiki, Yi-Qiao Song, Chu-Chung Huang, Ching-Po Lin, Nikolaus Weiskopf, Alfred Anwander, Derek K. Jones, Bruce R. Rosen, Lawrence L. Wald, Susie Yi Huang
2022	J	`jnl`	SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. NeuroImage Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
2022	J	`jnl`	Wave-Encoded Model-based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction. CoRR Jaejin Cho, Borjan A. Gagoski, Tae Hyung Kim, Qiyuan Tian, Stephen Robert Frost, Itthi Chatnuntawech, Berkin Bilgic
2021	J	`jnl`	Accurate parameter estimation using scan-specific unsupervised deep learning for relaxometry and MR fingerprinting. CoRR Mengze Gao, Huihui Ye, Tae Hyung Kim, Zijing Zhang, Seohee So, Berkin Bilgic
2021	J	`jnl`	Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. NeuroImage Susie Yi Huang, Thomas Witzel, Boris Keil, Alina Scholz, Mathias Davids, Peter Dietz, Elmar Rummert, Rebecca Ramb, John E. Kirsch, Anastasia Yendiki, Qiuyun Fan, Qiyuan Tian, Gabriel Ramos-Llordén, Hong-Hsi Lee, Aapo Nummenmaa, Berkin Bilgic, Kawin Setsompop, Fuyixue Wang, Alexandru Vlad Avram, Michal E. Komlosh, Dan Benjamini, Kulam Najmudeen Magdoom, Sudhir K. Pathak, Walter Schneider, Dmitry S. Novikov, Els Fieremans, Slimane Tounekti, Choukri Mekkaoui, Jean Augustinack, Daniel R. Berger, Alexander Shapson-Coe, Jeff Lichtman, Peter J. Basser, Lawrence L. Wald, Bruce R. Rosen
2021	J	`jnl`	Covariance-Free Sparse Bayesian Learning. CoRR Alexander Lin, Andrew H. Song, Berkin Bilgic, Demba E. Ba
2021	J	`jnl`	High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. NeuroImage Robert Jones, Chiara Maffei, Jean Augustinack, Bruce Fischl, Hui Wang, Berkin Bilgic, Anastasia Yendiki
2021	J	`jnl`	Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. NeuroImage Qiyuan Tian, Natalia Zaretskaya, Qiuyun Fan, Chanon Ngamsombat, Berkin Bilgic, Jonathan R. Polimeni, Susie Yi Huang
2021	J	`jnl`	Quantifying the uncertainty of neural networks using Monte Carlo dropout for deep learning based quantitative MRI. CoRR Mehmet Yigit Avci, Ziyu Li, Qiuyun Fan, Susie Yi Huang, Berkin Bilgic, Qiyuan Tian
2021	J	`jnl`	SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. CoRR Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
2021	J	`jnl`	SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. CoRR Qiyuan Tian, Ziyu Li, Qiuyun Fan, Chanon Ngamsombat, Yuxin Hu, Congyu Liao, Fuyixue Wang, Kawin Setsompop, Jonathan R. Polimeni, Berkin Bilgic, Susie Yi Huang
2021	J	`jnl`	Scan Specific Artifact Reduction in K-space (SPARK) Neural Networks Synergize with Physics-based Reconstruction to Accelerate MRI. CoRR Jonathan I. Tamir, Onur Beker, Heng Yu, Elfar Adalsteinsson, Berkin Bilgic
2021	J	`jnl`	Variable flip angle echo planar time-resolved imaging (vFA-EPTI) for fast high-resolution gradient echo myelin water imaging. NeuroImage Zijing Dong, Fuyixue Wang, Kwok-Shing Chan, Timothy G. Reese, Berkin Bilgic, José P. Marques, Kawin Setsompop
2021	J	`jnl`	eRAKI: Fast Robust Artificial neural networks for K-space Interpolation (RAKI) with Coil Combination and Joint Reconstruction. CoRR Heng Yu, Zijing Dong, Jonathan I. Tamir, Congyu Liao, Kawin Setsompop, Berkin Bilgic
2020	J	`jnl`	DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. NeuroImage Qiyuan Tian, Berkin Bilgic, Qiuyun Fan, Congyu Liao, Chanon Ngamsombat, Yuxin Hu, Thomas Witzel, Kawin Setsompop, Jonathan R. Polimeni, Susie Yi Huang
2019	J	`jnl`	Nonlinear Dipole Inversion (NDI) enables Quantitative Susceptibility Mapping (QSM) without parameter tuning. CoRR Daniel Polak, Itthi Chatnuntawech, Jaeyeon Yoon, Siddharth Srinivasan Iyer, Jongho Lee, Peter Bachert, Elfar Adalsteinsson, Kawin Setsompop, Berkin Bilgic
2019	J	`jnl`	Phase-matched virtual coil reconstruction for highly accelerated diffusion echo-planar imaging. NeuroImage Congyu Liao, Mary Kate Manhard, Berkin Bilgic, Qiyuan Tian, Qiuyun Fan, Sohyun Han, Fuyixue Wang, Daniel Joseph Park, Thomas Witzel, Jianhui Zhong, Haifeng Wang, Lawrence L. Wald, Kawin Setsompop
2018	J	`jnl`	Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. CoRR Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Stephen F. Cauley, Susie Yi Huang, Jonathan R. Polimeni, Lawrence L. Wald, Kawin Setsompop
2018	J	`jnl`	Quantitative susceptibility mapping using deep neural network: QSMnet. NeuroImage Jaeyeon Yoon, Enhao Gong, Itthi Chatnuntawech, Berkin Bilgic, Jin-Gu Lee, Woojin Jung, Jingyu Ko, Hosan Jung, Kawin Setsompop, Greg Zaharchuk, Eung-Yeop Kim, John M. Pauly, Jongho Lee
2018	J	`jnl`	Rice Classification Using Spatio-Spectral Deep Convolutional Neural Network. CoRR Itthi Chatnuntawech, Kittipong Tantisantisom, Paisan Khanchaitit, Thitikorn Boonkoom, Berkin Bilgic, Ekapol Chuangsuwanich
2017	J	`jnl`	3D MR fingerprinting with accelerated stack-of-spirals and hybrid sliding-window and GRAPPA reconstruction. NeuroImage Congyu Liao, Berkin Bilgic, Mary Kate Manhard, Bo Zhao, Xiaozhi Cao, Jianhui Zhong, Lawrence L. Wald, Kawin Setsompop
2017	J	`jnl`	Simultaneous Time Interleaved MultiSlice (STIMS) for Rapid Susceptibility Weighted acquisition. NeuroImage Berkin Bilgic, Huihui Ye, Lawrence L. Wald, Kawin Setsompop
2017	—	`conf`	Simultaneous multislice magnetic resonance fingerprinting with low-rank and subspace modeling. EMBC Bo Zhao, Berkin Bilgic, Elfar Adalsteinsson, Mark A. Griswold, Lawrence L. Wald, Kawin Setsompop
2016	J	`jnl`	Rapid multi-orientation quantitative susceptibility mapping. NeuroImage Berkin Bilgic, Luke Xie, Russell Dibb, Christian Langkammer, Aysegul Mutluay, Huihui Ye, Jonathan R. Polimeni, Jean Augustinack, Chunlei Liu, Lawrence L. Wald, Kawin Setsompop
2016	—	`conf`	Vessel Orientation Constrained Quantitative Susceptibility Mapping (QSM) Reconstruction. MICCAI (3) Suheyla Cetin, Berkin Bilgic, Audrey P. Fan, Samantha J. Holdsworth, Gözde B. Ünal
2015	J	`jnl`	Fast quantitative susceptibility mapping using 3D EPI and total generalized variation. NeuroImage Christian Langkammer, Kristian Bredies, Benedikt A. Poser, Markus Barth, Gernot Reishofer, Audrey Peiwen Fan, Berkin Bilgic, Franz Fazekas, Caterina Mainero, Stefan Ropele
2015	—	`conf`	Fast reconstruction for accelerated multi-slice multi-contrast MRI. ISBI Itthi Chatnuntawech, Berkin Bilgic, Adrián Martín, Kawin Setsompop, Elfar Adalsteinsson
2015	—	`conf`	Maximum likelihood reconstruction for magnetic resonance fingerprinting. ISBI Bo Zhao, Fan Lam, Berkin Bilgic, Huihui Ye, Kawin Setsompop
2013	J	`jnl`	Fast Dictionary-Based Reconstruction for Diffusion Spectrum Imaging. IEEE Trans. Medical Imaging Berkin Bilgic, Itthi Chatnuntawech, Kawin Setsompop, Stephen F. Cauley, Anastasia Yendiki, Lawrence L. Wald, Elfar Adalsteinsson
2013	—	`conf`	Quantitative Susceptibility Map Reconstruction via a Total Generalized Variation Regularization. PRNI Felipe Yanez, Audrey P. Fan, Berkin Bilgic, Carlos Milovic, Elfar Adalsteinsson, Pablo Irarrazaval
2013	—	`—`	Reconstruction algorithms for Magnetic Resonance Imaging. Berkin Bilgic
2012	—	`conf`	Accelerated Diffusion Spectrum Imaging with Compressed Sensing Using Adaptive Dictionaries. MICCAI (3) Berkin Bilgic, Kawin Setsompop, Julien Cohen-Adad, Van J. Wedeen, Lawrence L. Wald, Elfar Adalsteinsson
2012	J	`jnl`	MRI estimates of brain iron concentration in normal aging using quantitative susceptibility mapping. NeuroImage Berkin Bilgic, Adolf Pfefferbaum, Torsten Rohlfing, Edith V. Sullivan, Elfar Adalsteinsson
2010	B	`conf`	Efficient integral image computation on the GPU. Intelligent Vehicles Symposium Berkin Bilgic, Berthold K. P. Horn, Ichiro Masaki
2010	B	`conf`	Fast human detection with cascaded ensembles on the GPU. Intelligent Vehicles Symposium Berkin Bilgic, Berthold K. P. Horn, Ichiro Masaki