Berend Snel

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis.
PLoS Comput. Biol.
Samuel H. A. von der Dunk, Paulien Hogeweg, Berend Snel
2021 J jnl
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
Briefings Bioinform.
Eva S. Deutekom, Berend Snel, Teunis J. P. van Dam
2019 J jnl
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.
PLoS Comput. Biol.
Eva S. Deutekom, Julian Vosseberg, Teunis J. P. van Dam, Berend Snel
2013 J jnl
Shared Protein Complex Subunits Contribute to Explaining Disrupted Co-occurrence.
PLoS Comput. Biol.
Adrian Schneider, Michael F. Seidl, Berend Snel
2010 J jnl
Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.
BMC Bioinform.
Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst, Berend Snel
2009 J jnl
Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes.
PLoS Comput. Biol.
Like Fokkens, Berend Snel
2008 J jnl
Protein Complex Evolution Does Not Involve Extensive Network Rewiring.
PLoS Comput. Biol.
Teunis J. P. van Dam, Berend Snel
2007 J jnl
Assessment of phylogenomic and orthology approaches for phylogenetic inference.
Bioinform.
Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen
2007 J jnl
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.
BMC Bioinform.
Jos Boekhorst, Berend Snel
2007 J jnl
Orthology prediction at scalable resolution by phylogenetic tree analysis.
BMC Bioinform.
René T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen
2007 J jnl
STRING 7 - recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res.
Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork
2005 J jnl
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic Acids Res.
Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork
2003 J jnl
STRING: a database of predicted functional associations between proteins.
Nucleic Acids Res.
Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel