Berend C. Stoel

28 papers B 5Journal 16Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Feature analysis for proper intensity scaling and feature distinction in class activation maps. Knowl. Based Syst. Yanli Li, Denis P. Shamonin, Tahereh Hassanzadeh, Monique Reijnierse, Annette H. M. van der Helm-van Mil, Berend C. Stoel
2024	J	`jnl`	A deep learning-based comparative MRI model to detect inflammatory changes in rheumatoid arthritis. Biomed. Signal Process. Control. Tahereh Hassanzadeh, Denis P. Shamonin, Yanli Li, Doortje I. Krijbolder, Monique Reijnierse, Annette H. M. van der Helm-van Mil, Berend C. Stoel
2024	J	`jnl`	Integrated feature analysis for deep learning interpretation and class activation maps. CoRR Yanli Li, Tahereh Hassanzadeh, Denis P. Shamonin, Monique Reijnierse, Annette H. M. van der Helm-van Mil, Berend C. Stoel
2024	J	`jnl`	Seg-metrics: a Python package to compute segmentation metrics. CoRR Jingnan Jia, Marius Staring, Berend C. Stoel
2024	J	`jnl`	Using 3D point cloud and graph-based neural networks to improve the estimation of pulmonary function tests from chest CT. Comput. Biol. Medicine Jingnan Jia, Bo Yu, Prerak Mody, Maarten K. Ninaber, Anne A. Schouffoer, Jeska K. De Vries-Bouwstra, Lucia J. M. Kroft, Marius Staring, Berend C. Stoel
2023	J	`jnl`	Automatic Pulmonary Function Estimation From Chest CT Scans Using Deep Regression Neural Networks: The Relation Between Structure and Function in Systemic Sclerosis. IEEE Access Jingnan Jia, Emiel R. Marges, Jeska K. De Vries-Bouwstra, Maarten K. Ninaber, Lucia J. M. Kroft, Anne A. Schouffoer, Marius Staring, Berend C. Stoel
2022	—	`conf`	Prediction of lung CT scores of systemic sclerosis by cascaded regression neural networks. Computer-Aided Diagnosis Jingnan Jia, Marius Staring, Irene Hernández-Girón, Lucia J. M. Kroft, Anne A. Schouffoer, Berend C. Stoel
2021	—	`conf`	Multi-Task Semi-Supervised Learning For Pulmonary Lobe Segmentation. ISBI Jingnan Jia, Zhiwei Zhai, M. Els Bakker, Irene Hernández-Girón, Marius Staring, Berend C. Stoel
2021	J	`jnl`	Multi-task Semi-supervised Learning for Pulmonary Lobe Segmentation. CoRR Jingnan Jia, Zhiwei Zhai, M. Els Bakker, Irene Hernández-Girón, Marius Staring, Berend C. Stoel
2021	—	`conf`	Optimization of hepatic vasculature segmentation from contrast-enhanced MRI, exploring two 3D Unet modifications and various loss functions. Image-Guided Procedures Oleksandra V. Ivashchenko, Zhiwei Zhai, Berend C. Stoel, Theodoor Jacques Marie Ruers
2021	J	`jnl`	Prediction of Lung CT Scores of Systemic Sclerosis by Cascaded Regression Neural Networks. CoRR Jingnan Jia, Marius Staring, Irene Hernández-Girón, Lucia J. M. Kroft, Anne A. Schouffoer, Berend C. Stoel
2020	J	`jnl`	A framework for pulmonary fissure segmentation in 3D CT images using a directional derivative of plate filter. Signal Process. Hong Zhao, Berend C. Stoel, Marius Staring, M. Els Bakker, Jan Stolk, Ping Zhou, Changyan Xiao
2019	—	`conf`	Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation. GLMI@MICCAI Zhiwei Zhai, Marius Staring, Xuhui Zhou, Qiuxia Xie, Xiaojuan Xiao, M. Els Bakker, Lucia J. M. Kroft, Boudewijn P. F. Lelieveldt, Gudula J. A. M. Boon, Frederikus A. Klok, Berend C. Stoel
2019	J	`jnl`	Registration of vascular structures using a hybrid mixture model. Int. J. Comput. Assist. Radiol. Surg. Siming Bayer, Zhiwei Zhai, Maddalena Strumia, Xiaoguang Tong, Ying Gao, Marius Staring, Berend C. Stoel, Rebecca Fahrig, Arya Nabavi, Andreas Maier, Nishant Ravikumar
2018	—	`conf`	Pulmonary Vessel Tree Matching for Quantifying Changes in Vascular Morphology. MICCAI (2) Zhiwei Zhai, Marius Staring, Hideki Ota, Berend C. Stoel
2016	J	`jnl`	A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection. Int. J. Comput. Assist. Radiol. Surg. Daniel F. Malan, Stefan Johann van der Walt, Renata G. Raidou, Bas van den Berg, Berend C. Stoel, Charl P. Botha, Rob G. H. H. Nelissen, Edward R. Valstar
2016	B	`conf`	Lung vessel segmentation in CT images using graph cuts. Image Processing Zhiwei Zhai, Marius Staring, Berend C. Stoel
2016	J	`jnl`	Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter. IEEE Trans. Medical Imaging Changyan Xiao, Berend C. Stoel, M. Els Bakker, Yuanyuan Peng, Jan Stolk, Marius Staring
2014	J	`jnl`	Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study. Medical Image Anal. Rina Dewi Rudyanto, Sjoerd Kerkstra, Eva M. van Rikxoort, Catalin I. Fetita, Pierre-Yves Brillet, Christophe Lefevre, Wenzhe Xue, Xiangjun Zhu, Jianming Liang, Ilkay Öksüz, Devrim Ünay, Kamuran Kadipasaoglu, Raúl San José Estépar, James C. Ross, George R. Washko, Juan-Carlos Prieto, Marcela Hernández Hoyos, Maciej Orkisz, Hans Meine, Markus Hüllebrand, Christina Stöcker, Fernando López-Mir, Valery Naranjo, Eliseo Villanueva, Marius Staring, Changyan Xiao, Berend C. Stoel, Anna Fabijanska, Erik Smistad
2013	B	`conf`	A derivative of stick filter for pulmonary fissure detection in CT images. Image Processing Changyan Xiao, Marius Staring, Juan Wang, Denis P. Shamonin, Berend C. Stoel
2013	J	`jnl`	Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images. IEEE Trans. Image Process. Changyan Xiao, Marius Staring, Yaonan Wang, Denis P. Shamonin, Berend C. Stoel
2012	B	`conf`	Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting. Image Processing Denis P. Shamonin, Marius Staring, M. Els Bakker, Changyan Xiao, Jan Stolk, Johan H. C. Reiber, Berend C. Stoel
2012	B	`conf`	Local SIMPLE multi atlas-based segmentation applied to lung lobe detection on chest CT. Image Processing Maruti Agarwal, Emile A. Hendriks, Berend C. Stoel, M. Els Bakker, Johan H. C. Reiber, Marius Staring
2011	J	`jnl`	A strain energy filter for 3D vessel enhancement with application to pulmonary CT images. Medical Image Anal. Changyan Xiao, Marius Staring, Denis P. Shamonin, Johan H. C. Reiber, Jan Stolk, Berend C. Stoel
2011	J	`jnl`	Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
2010	—	`conf`	A Strain Energy Filter for 3D Vessel Enhancement. MICCAI (3) Changyan Xiao, Marius Staring, Denis P. Shamonin, Johan H. C. Reiber, Jan Stolk, Berend C. Stoel
2009	B	`conf`	Towards local estimation of emphysema progression using image registration. Image Processing Marius Staring, M. Els Bakker, Denis P. Shamonin, Jan Stolk, Johan H. C. Reiber, Berend C. Stoel
2007	—	`conf`	Labeling the pulmonary arterial tree in CT images for automatic quantification of pulmonary embolism. Computer-Aided Diagnosis Ralph J. M. Peters, Henk A. Marquering, Halil Dogan, Emile A. Hendriks, Albert de Roos, Johan H. C. Reiber, Berend C. Stoel