Benjamin Schubert

36 papers A* 1A 2C 1Misc 3Journal 15Unranked 12

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Enhancing Multi-Epitope Vaccine Effectiveness Through State-of-the-Art Proteasomal Cleavage Prediction With Deep Learning. BIBM Ingo Ziegler, Bolei Ma, Bernd Bischl, Benjamin Schubert, Emilio Dorigatti
2025	J	`jnl`	TransFactor - prediction of pro-viral SARS-CoV-2 host factors using a protein language model. Bioinform. Yang An, Valter Bergant, Samuele Firmani, Corinna Grünke, Batiste Bonnal, Alexander Henrici, Andreas Pichlmair, Benjamin Schubert, Annalisa Marsico
2024	C	`conf`	Advancing Neonatal Care: A Deep Learning Approach for Non-Contact Heart Rate Monitoring. HealthCom Alex Grafton, Alejandra Castelblanco, Joana M. Warnecke, Lynn Thomson, Benjamin Schubert, Anne Hilgendorff, Julia A. Schnabel, Joan Lasenby, Kathryn Beardsall
2023	—	`conf`	Colorimetric Sensor Reading and Illumination Correction via Multi-Task Deep-Learning. EMBC Alejandra Castelblanco, Giusy Matzeu, Elisabetta Ruggeri, Fiorenzo G. Omenetto, Anne Hilgendorff, Julia A. Schnabel, Benjamin Schubert
2023	A	`conf`	Frequentist Uncertainty Quantification in Semi-Structured Neural Networks. AISTATS Emilio Dorigatti, Benjamin Schubert, Bernd Bischl, David Rügamer
2023	J	`jnl`	Multi-omics regulatory network inference in the presence of missing data. Briefings Bioinform. Juan D. Henao, Michael Lauber, Manuel Azevedo, Anastasiia Grekova, Fabian J. Theis, Markus List, Christoph Ogris, Benjamin Schubert
2023	—	`conf`	Partial Discharge UHF detection and classification with Machine Learning: a real case study. COINS Emanuele Ogliari, Maciej Sakwa, Jianguo Wei, Benjamin Schubert, Weilin Liu, Mauro Palo
2022	J	`jnl`	Improved proteasomal cleavage prediction with positive-unlabeled learning. CoRR Emilio Dorigatti, Bernd Bischl, Benjamin Schubert
2022	J	`jnl`	Positive-Unlabeled Learning with Uncertainty-aware Pseudo-label Selection. CoRR Emilio Dorigatti, Jann Goschenhofer, Benjamin Schubert, Mina Rezaei, Bernd Bischl
2020	J	`jnl`	Graph-theoretical formulation of the generalized epitope-based vaccine design problem. PLoS Comput. Biol. Emilio Dorigatti, Benjamin Schubert
2020	J	`jnl`	Joint epitope selection and spacer design for string-of-beads vaccines. Bioinform. Emilio Dorigatti, Benjamin Schubert
2019	J	`jnl`	ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinform. Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
2019	J	`jnl`	The EVcouplings Python framework for coevolutionary sequence analysis. Bioinform. Thomas A. Hopf, Anna G. Green, Benjamin Schubert, Sophia Mersmann, Charlotta Schärfe, John Ingraham, Ágnes Tóth-Petróczy, Kelly Brock, Adam J. Riesselman, Perry Palmedo, Chan Kang, Robert P. Sheridan, Eli J. Draizen, Christian Dallago, Chris Sander, Debora S. Marks
2018	J	`jnl`	Population-specific design of de-immunized protein biotherapeutics. PLoS Comput. Biol. Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
2017	—	`—`	Advanced Immunoinformatics Approaches for Precision Medicine Benjamin Schubert
2017	J	`jnl`	Development of the MPEG-H TV Audio System for ATSC 3.0. IEEE Trans. Broadcast. Robert L. Bleidt, Deep Sen, Andreas Niedermeier, Bernd Czelhan, Simone Fug, Sascha Disch, Jürgen Herre, Johannes Hilpert, Max Neuendorf, Harald Fuchs, Jochen Issing, Adrian Murtaza, Achim Kuntz, Michael Kratschmer, Fabian Kuch, Richard Fug, Benjamin Schubert, Sascha Dick, Guillaume Fuchs, Florian Schuh, Elena Burdiel, Nils Peters, Moo-young Kim
2017	J	`jnl`	ImmunoNodes - graphical development of complex immunoinformatics workflows. BMC Bioinform. Benjamin Schubert, Luis de la Garza, Christopher Mohr, Mathias Walzer, Oliver Kohlbacher
2017	J	`jnl`	Population-specific design of de-immunized protein biotherapeutics. CoRR Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
2017	—	`conf`	Review of UHF-Based Signal Processing Approaches for Partial Discharge Detection. EUROCAST (2) Benjamin Schubert, Mauro Palo, Thomas Schlechter
2016	J	`jnl`	FRED 2: an immunoinformatics framework for Python. Bioinform. Benjamin Schubert, Mathias Walzer, Hans-Philipp Brachvogel, András Szolek, Christopher Mohr, Oliver Kohlbacher
2015	—	`conf`	Envelope modeling for speech and audio processing using distribution quantization. EUSIPCO Tobias Jähnel, Tom Bäckström, Benjamin Schubert
2015	J	`jnl`	EpiToolKit - a web-based workbench for vaccine design. Bioinform. Benjamin Schubert, Hans-Philipp Brachvogel, Christopher Jürges, Oliver Kohlbacher
2015	A	`conf`	Failure Sketches: A Better Way to Debug. HotOS Baris Kasikci, Cristiano Pereira, Gilles Pokam, Benjamin Schubert, Madanlal Musuvathi, George Candea
2015	A*	`conf`	Failure sketching: a technique for automated root cause diagnosis of in-production failures. SOSP Baris Kasikci, Benjamin Schubert, Cristiano Pereira, Gilles Pokam, George Candea
2015	—	`conf`	Full-Duplex Wireless Transceiver in Presence of I/Q Mismatches: Experimentation and Estimation Algorithm. GLOBECOM Workshops Ramez Askar, Benjamin Schubert, Wilhelm Keusgen, Thomas Haustein
2015	Misc	`conf`	Improved error resilience for volte and VoIP with 3GPP EVS channel aware coding. ICASSP Venkatraman Atti, Daniel J. Sinder, Shaminda Subasingha, Vivek Rajendran, Duminda A. Dewasurendra, Venkata Chebiyyam, Imre Varga, Venkatesh Krishnan, Benjamin Schubert, Jérémie Lecomte, Xingtao Zhang, Lei Miao
2014	—	`conf`	Active self-interference cancellation mechanism for full-duplex wireless transceivers. CrownCom Ramez Askar, Thomas Kaiser, Benjamin Schubert, Thomas Haustein, Wilhelm Keusgen
2014	—	`conf`	I/Q Imbalance Calibration for Higher Self-Interference Cancellation Levels in Full-Duplex Wireless Transceivers. 5GU Ramez Askar, Nidal Zarifeh, Benjamin Schubert, Wilhelm Keusgen, Thomas Kaiser
2014	J	`jnl`	OptiType: precision HLA typing from next-generation sequencing data. Bioinform. András Szolek, Benjamin Schubert, Christopher Mohr, Marc Sturm, Magdalena Feldhahn, Oliver Kohlbacher
2014	Misc	`conf`	Sinusoidal substitution - An integrated parametric tool for enhancement of transform-based perceptual audio coders. ICASSP Sascha Disch, Benjamin Schubert
2014	—	`ch.`	WS-PGRADE/gUSE-Based Science Gateways in Teaching. Science Gateways for Distributed Computing Infrastructures Sílvia Delgado Olabarriaga, Ammar Benabdelkader, Matthan W. A. Caan, Mohammad Mahdi Jaghoori, Jens Krüger, Luis de la Garza, Christopher Mohr, Benjamin Schubert, Anatoli Danezi, Tamás Kiss
2013	—	`conf`	Augmented Volterra predistortion for the joint mitigation of power amplifier and I/Q modulator impairments in wideband flexible radio. GlobalSIP Benjamin Schubert, Ahmet Hasim Gokceoglu, Lauri Anttila, Mikko Valkama
2013	Misc	`conf`	Cheap beeps - Efficient synthesis of sinusoids and sweeps in the MDCT domain. ICASSP Sascha Disch, Benjamin Schubert, Bernd Edler
2012	—	`conf`	Smart RF signal processing for advanced transmitters: From theory to practice. ISSSE Jian Luo, Jacek Liszewski, Benjamin Schubert, Wilhelm Keusgen, Andreas Kortke
2012	—	`conf`	miHA-match: computational detection of tissue-specific minor histocompatibility antigens. BCB Magdalena Feldhahn, Karin Schilbach, Pierre Dönnes, Hans-Georg Rammensee, Benjamin Schubert, Oliver Kohlbacher
2006	—	`conf`	FIR Linear Relay Network with Frequency Selective Channels. ICC Tobias J. Oechtering, Benjamin Schubert, Holger Boche