Benjamin M. Good

46 papers A* 2Misc 4Journal 28Unranked 11

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
2021	J	`jnl`	Reactome and the Gene Ontology: digital convergence of data resources. Bioinform. Benjamin M. Good, Kimberly Van Auken, David P. Hill, Huaiyu Mi, Seth Carbon, James P. Balhoff, Laurent-Philippe Albou, Paul D. Thomas, Christopher J. Mungall, Judith A. Blake, Peter D'Eustachio
2020	J	`jnl`	Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts. Bioinform. Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
2020	J	`jnl`	Structured reviews for data and knowledge-driven research. Database J. Biol. Databases Curation Núria Queralt-Rosinach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su
2019	—	`conf`	Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts. AKBC Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
2019	J	`jnl`	ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su
2018	—	`conf`	Arachne: an OWL RL Reasoner Applied to Gene Ontology Causal Activity Models (and Beyond). ISWC (P&D/Industry/BlueSky) James P. Balhoff, Benjamin M. Good, Seth Carbon, Chris Mungall
2017	J	`jnl`	WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database J. Biol. Databases Curation Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database J. Biol. Databases Curation Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
2016	J	`jnl`	Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinform. Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database J. Biol. Databases Curation Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database J. Biol. Databases Curation Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong
2016	J	`jnl`	Crowdsourcing in biomedicine: challenges and opportunities. Briefings Bioinform. Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su, Zhiyong Lu
2016	—	`conf`	Linking Wikidata to the Rest of the Semantic Web. SWAT4LS Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good
2016	—	`conf`	Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester
2016	—	`conf`	Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka
2016	J	`jnl`	Wikidata as a semantic framework for the Gene Wiki initiative. Database J. Biol. Databases Curation Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su
2015	J	`jnl`	Branch: An interactive, web-based tool for testing hypotheses and developing predictive models. CoRR Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
2015	J	`jnl`	Exposing ambiguities in a relation-extraction gold standard with crowdsourcing. CoRR Tong Shu Li, Benjamin M. Good, Andrew I. Su
2015	Misc	`conf`	Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts. Pacific Symposium on Biocomputing Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su
2015	J	`jnl`	OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web. CoRR Benjamin M. Good, Gavin Ha, Chi K. Ho, Mark D. Wilkinson
2015	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu
2015	—	`conf`	Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. SWAT4LS Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good
2014	J	`jnl`	Microtask crowdsourcing for disease mention annotation in PubMed abstracts. CoRR Benjamin M. Good, Max Nanis, Andrew I. Su
2013	J	`jnl`	A task-based approach for Gene Ontology evaluation. J. Biomed. Semant. Erik L. Clarke, Salvatore Loguercio, Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	Crowdsourcing for Bioinformatics CoRR Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	Crowdsourcing for bioinformatics. Bioinform. Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	Ten Simple Rules for Cultivating Open Science and Collaborative R&D. PLoS Comput. Biol. Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne
2012	—	`conf`	A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. HISB Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su
2012	J	`jnl`	Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database J. Biol. Databases Curation Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
2012	J	`jnl`	Linking genes to diseases with a SNPedia-Gene Wiki mashup. J. Biomed. Semant. Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
2012	—	`ed.`	Proceedings of the 2nd Workshop on Semantic Publishing, co-located with the 9th Extended Semantic Web Conference, SePublica@ESWC 2012, Hersonissos, Crete, Greece, May 28, 2012 SePublica@ESWC Alexander García Castro, Christoph Lange, Frank van Harmelen, Benjamin M. Good
2012	J	`jnl`	The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Res. Benjamin M. Good, Erik L. Clarke, Luca de Alfaro, Andrew I. Su
2012	—	`conf`	genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. HISB Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su
2009	J	`jnl`	Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. BMC Bioinform. Benjamin M. Good, Joseph T. Tennis, Mark D. Wilkinson
2009	J	`jnl`	Term based comparison metrics for controlled and uncontrolled indexing languages. Inf. Res. Benjamin M. Good, Joseph T. Tennis
2008	—	`conf`	Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse. DILS François Belleau, Nicole Tourigny, Benjamin M. Good, Jean Morissette
2008	—	`conf`	Evidence of term-structure differences among folksonomies and controlled indexing languages. ASIST Benjamin M. Good, Joseph T. Tennis
2007	J	`jnl`	DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs. Bioinform. Young C. Song, Edward A. Kawas, Benjamin M. Good, Mark D. Wilkinson, Scott J. Tebbutt
2007	A*	`conf`	Ontology engineering using volunteer labor. WWW Benjamin M. Good, Mark D. Wilkinson
2007	A*	`conf`	Tag clouds for summarizing web search results. WWW Byron Yu-Lin Kuo, Thomas Hentrich, Benjamin M. Good, Mark D. Wilkinson
2006	Misc	`conf`	A Smarter FAQ. IKE Benjamin M. Good, James Hartzell, Rodney S. Tosten
2006	Misc	`conf`	Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development. Pacific Symposium on Biocomputing Benjamin M. Good, Erin M. Tranfield, Poh C. Tan, Marlene Shehata, Gurpreet K. Singhera, John Gosselink, Elena B. Okon, Mark D. Wilkinson
2006	J	`jnl`	The Life Sciences Semantic Web is Full of Creeps! Briefings Bioinform. Benjamin M. Good, Mark D. Wilkinson
2006	J	`jnl`	iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website. BMC Bioinform. Benjamin M. Good, Edward A. Kawas, Byron Yu-Lin Kuo, Mark D. Wilkinson
1999	—	`conf`	HIKE (HPKB Integrated Knowledge Environment) - A Query Interface and Integrated Knowledge Environment for HPKB. AAAI/IAAI Barbara Starr, Vinay K. Chaudhri, Boris Katz, Benjamin M. Good, Jérôme Thoméré