Benjamin Audit

21 papers Journal 18Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Identifying a Piecewise Affine Signal From Its Nonlinear Observation - Application to DNA Replication Analysis.
IEEE Trans. Signal Process.
Clara Lage, Nelly Pustelnik, Jean-Michel Arbona, Benjamin Audit, Rémi Gribonval
2024 J jnl
A Comparative Analysis of Gene Expression Profiling by Statistical and Machine Learning Approaches.
CoRR
Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Benjamin Audit, Pierre Borgnat, Jean-Michel Arbona
2024 J jnl
Space-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method.
IEEE Signal Process. Lett.
Clara Lage, Nelly Pustelnik, Jean-Michel Arbona, Benjamin Audit
2023 J jnl
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths.
PLoS Comput. Biol.
Jean-Michel Arbona, Hadi Kabalane, Jeremy Barbier, Arach Goldar, Olivier Hyrien, Benjamin Audit
2023 J jnl
Studying Limits of Explainability by Integrated Gradients for Gene Expression Models.
CoRR
Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Jean-Michel Arbona, Benjamin Audit, Pierre Borgnat
2017 J jnl
Multi-scale structural community organisation of the human genome.
BMC Bioinform.
Rasha E. Boulos, Nicolas Tremblay, Alain Arneodo, Pierre Borgnat, Benjamin Audit
2015 J jnl
Embryonic Stem Cell Specific "Master" Replication Origins at the Heart of the Loss of Pluripotency.
PLoS Comput. Biol.
Hanna Julienne, Benjamin Audit, Alain Arneodo
2014 J jnl
Large replication skew domains delimit GC-poor gene deserts in human.
Comput. Biol. Chem.
Lamia Zaghloul, Guénola Drillon, Rasha E. Boulos, Françoise Argoul, Claude Thermes, Alain Arneodo, Benjamin Audit
2013 J jnl
Human Genome Replication Proceeds through Four Chromatin States.
PLoS Comput. Biol.
Hanna Julienne, Azedine Zoufir, Benjamin Audit, Alain Arneodo
2013 — conf
Relating mammalian replication program to large-scale chromatin folding.
BCB
Benjamin Audit, Antoine Baker, Rasha E. Boulos, Hanna Julienne, Alain Arneodo, C. L. Chen, Yves D'Aubenton-Carafa, Claude Thermes, Arach Goldar, Guillaume Guilbaud, Aurélien Rappailles, Olivier Hyrien
2012 J jnl
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines.
PLoS Comput. Biol.
Antoine Baker, Benjamin Audit, Chun-Long Chen, Benoit Moindrot, Antoine Leleu, Guillaume Guilbaud, Aurélien Rappailles, Cédric Vaillant, Arach Goldar, Fabien Mongelard, Yves D'Aubenton-Carafa, Olivier Hyrien, Claude Thermes, Alain Arneodo
2011 J jnl
Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome.
PLoS Comput. Biol.
Guillaume Guilbaud, Aurélien Rappailles, Antoine Baker, Chun-Long Chen, Alain Arneodo, Arach Goldar, Yves D'Aubenton-Carafa, Claude Thermes, Benjamin Audit, Olivier Hyrien
2009 — ch.
Fractals and Wavelets: What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal Analysis of DNA Sequences.
Encyclopedia of Complexity and Systems Science
Alain Arneodo, Benjamin Audit, Edward-Benedict Brodie of Brodie, Samuel Nicolay, Marie Touchon, Yves D'Aubenton-Carafa, Maxime Huvet, Claude Thermes
2008 J jnl
Wavelet-based multifractal analysis.
Scholarpedia
Alain Arneodo, Benjamin Audit, Pierre Kestener, Stéphane G. Roux
2007 J jnl
CORRIE: enzyme sequence annotation with confidence estimates.
BMC Bioinform.
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis
2006 — conf
Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes.
EUSIPCO
Alain Arneodo, Yves D'Aubenton-Carafa, Benjamin Audit, Edward-Benedict Brodie, Samuel Nicolay, Philippe Saint-Jean, Claude Thermes, Marie Touchon, Cédric Vaillant
2005 J jnl
CoGenT++: an extensive and extensible data environment for computational genomics.
Bioinform.
Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis
2005 J jnl
Probabilistic annotation of protein sequences based on functional classifications.
BMC Bioinform.
Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit
2003 J jnl
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics.
Bioinform.
Paul J. Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis
2002 J jnl
Modeling the percolation of annotation errors in a database of protein sequences.
Bioinform.
Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis
2002 J jnl
Wavelet-based estimators of scaling behavior.
IEEE Trans. Inf. Theory
Benjamin Audit, Emmanuel Bacry, Jean-François Muzy, Alain Arneodo