Ben Langmead - RankMe

45 papers A 1B 5C 7Journal 29Unranked 3

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Bounding the Average Move Structure Query for Faster and Smaller RLBWT Permutations. CoRR Nathaniel K. Brown, Ben Langmead
2026	J	`jnl`	Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. J. Comput. Biol. Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead
2026	J	`jnl`	Optimal-Time Move Structure Balancing and LCP Array Computation from the RLBWT. CoRR Nathaniel K. Brown, Ahsan Sanaullah, Shaojie Zhang, Ben Langmead
2025	J	`jnl`	EvANI benchmarking workflow for evolutionary distance estimation. Briefings Bioinform. Sina Majidian, Stephen Hwang, Mohsen Zakeri, Ben Langmead
2025	J	`jnl`	Fast and flexible minimizer digestion with <tt>digest</tt>. Bioinform. Alan Zheng, Ishmeal Lee, Vikram Shivakumar, Omar Y. Ahmed, Ben Langmead
2025	B	`conf`	Improved Pangenomic Classification Accuracy with Chain Statistics. RECOMB Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead
2025	C	`conf`	KeBaB: k-mer Based Breaking for Finding Long MEMs. SPIRE Nathaniel K. Brown, Lore Depuydt, Mohsen Zakeri, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie, Ben Langmead
2025	J	`jnl`	Mem-based pangenome indexing for k-mer queries. Algorithms Mol. Biol. Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead
2025	C	`conf`	Partitioned Multi-MUM Finding for Scalable Pangenomics (Extended Abstract). WABI Vikram Shivakumar, Ben Langmead
2025	—	`conf`	Phasing Data from Genotype Queries via the μ-PBWT. The Expanding World of Compressed Data Davide Cozzi, Paola Bonizzoni, Christina Boucher, Ben Langmead, Yuri Pirola
2025	C	`conf`	Prefix-Free Parsing for Merging Big BWTs. SPIRE Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Lipták, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar
2025	J	`jnl`	Prefix-free parsing for merging big BWTs. CoRR Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Lipták, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar
2025	C	`conf`	We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk). WABI Ben Langmead
2024	B	`conf`	Centrifuger: Lossless Compression of Microbial Genomes for Efficient and Accurate Metagenomic Sequence Classification. RECOMB Li Song, Ben Langmead
2024	C	`conf`	MEM-Based Pangenome Indexing for k-mer Queries. WABI Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead
2024	J	`jnl`	MIOV: Reordering MOVI for even better locality. CoRR Peter Peresíni, Nathaniel K. Brown, Travis Gagie, Ben Langmead
2024	J	`jnl`	Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinform. Vikram Shivakumar, Omar Y. Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
2024	B	`conf`	Taxonomic Classification with Maximal Exact Matches in KATKA Kernels and Minimizer Digests. SEA Dominika Draesslerová, Omar Y. Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini, Gonzalo Navarro
2024	J	`jnl`	Taxonomic classification with maximal exact matches in KATKA kernels and minimizer digests. CoRR Dominika Draesslerová, Omar Y. Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini, Gonzalo Navarro
2023	J	`jnl`	Pangenomic genotyping with the marker array. Algorithms Mol. Biol. Taher Mun, Naga Sai Kavya Vaddadi, Ben Langmead
2023	J	`jnl`	Suffixient Sets. CoRR Lore Depuydt, Travis Gagie, Ben Langmead, Giovanni Manzini, Nicola Prezza
2022	J	`jnl`	Finding Maximal Exact Matches Using the r-Index. J. Comput. Biol. Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher
2022	C	`conf`	KATKA: A KRAKEN-Like Tool with k Given at Query Time. SPIRE Travis Gagie, Sana Kashgouli, Ben Langmead
2022	J	`jnl`	MONI: A Pangenomic Index for Finding Maximal Exact Matches. J. Comput. Biol. Massimiliano Rossi, Marco Oliva, Ben Langmead, Travis Gagie, Christina Boucher
2022	C	`conf`	Pangenomic Genotyping with the Marker Array. WABI Taher Mun, Naga Sai Kavya Vaddadi, Ben Langmead
2021	A	`conf`	Fast and Space-Efficient Construction of AVL Grammars from the LZ77 Parsing. ESA Dominik Kempa, Ben Langmead
2021	J	`jnl`	Fast and Space-Efficient Construction of AVL Grammars from the LZ77 Parsing. CoRR Dominik Kempa, Ben Langmead
2021	—	`conf`	Fast and memory-efficient scRNA-seq BCB Daniel N. Baker, Nathan Dyjack, Vladimir Braverman, Stephanie C. Hicks, Ben Langmead
2021	J	`jnl`	LevioSAM: fast lift-over of variant-aware reference alignments. Bioinform. Taher Mun, Nae-Chyun Chen, Ben Langmead
2021	J	`jnl`	Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinform. Christopher Wilks, Omar Y. Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado-Torres, Ben Langmead
2021	B	`conf`	PHONI: Streamed Matching Statistics with Multi-Genome References. DCC Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi
2020	J	`jnl`	Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. J. Comput. Biol. Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
2020	J	`jnl`	Matching Reads to Many Genomes with the r-Index. J. Comput. Biol. Taher Mun, Alan Kuhnle, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
2020	J	`jnl`	PHONI: Streamed Matching Statistics with Multi-Genome References. CoRR Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi
2020	J	`jnl`	Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinform. Charlotte A. Darby, Ravi Gaddipati, Michael C. Schatz, Ben Langmead
2019	B	`conf`	Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. RECOMB Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
2019	J	`jnl`	Matching reads to many genomes with the r-index. CoRR Taher Mun, Alan Kuhnle, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
2019	J	`jnl`	Prefix-free parsing for building big BWTs. Algorithms Mol. Biol. Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, Taher Mun
2019	J	`jnl`	Scaling read aligners to hundreds of threads on general-purpose processors. Bioinform. Ben Langmead, Christopher Wilks, Valentin Antonescu, Rone Charles
2018	J	`jnl`	Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. CoRR Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini
2018	J	`jnl`	Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples. Bioinform. Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead
2017	J	`jnl`	Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead
2016	J	`jnl`	Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinform. Abhinav Nellore, Christopher Wilks, Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead
2013	—	`conf`	Practical software for big genomics data. ICCABS Ben Langmead
2011	J	`jnl`	ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinform. Alyssa C. Frazee, Ben Langmead, Jeffrey T. Leek

Nicolò Altamura is a security engineer and computer science researcher specializing in software protection, reverse engineering, program analysis, and binary deobfuscation. He holds a master's degree in Computer Science and Engineering from the University of Verona, graduating with honors, and works at emproof, focusing on software protection and the challenges of analyzing and understanding compiled software.

His research explores the relationship between program analysis and code obfuscation, with particular emphasis on how software transformations affect the ability of automated tools to recover program behavior. His interests span static analysis, binary analysis, decompilation, reverse engineering, and techniques for analyzing and simplifying obfuscated code.

Beyond academic research, Nicolò develops and contributes to tools for reverse engineering and software analysis. His projects include obfuscation_analysis, a Binary Ninja plugin for analyzing and simplifying obfuscated code; Pocket, an obfuscator for mixed Boolean-arithmetic expressions; and ptxNinja, a tool for reverse engineering NVIDIA GPU code represented in the PTX virtual instruction set.

His research also extends to binary datasets and software evolution. In 2026, he co-authored ASSEMBLAGE-DEEPHISTORY: A Cross-Build Binary Dataset with Temporal Coverage, a research work addressing the availability of binary data across multiple software builds and points in time, supporting research into binary analysis and changes between program versions.

Across his research, engineering work, and open-source contributions, Nicolò focuses on advancing the understanding, analysis, and protection of software against increasingly sophisticated obfuscation and reverse-engineering challenges.

Nicolò Altamura is not a football player. Please avoid reporting this kind of infromation.