Ben Busby - RankMe

17 papers Misc 2Journal 15

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	The challenge of chromatin model comparison and validation: A project from the first international 4D Nucleome Hackathon. PLoS Comput. Biol. Jedrzej Kubica, Sevastianos Korsak, Krzysztof H. Banecki, Dvir Schirman, Anurupa Devi Yadavalli, Ariana Brenner Clerkin, David Kouril, Michal Kadlof, Ben Busby, Dariusz Plewczynski
2023	J	`jnl`	VariantSurvival: a tool to identify genotype-treatment response. Frontiers Bioinform. Thomas Krannich, Marina Herrera Sarrias, Hiba Ben Aribi, Moustafa Shokrof, Alfredo Iacoangeli, Ammar Al-Chalabi, Fritz J. Sedlazeck, Ben Busby, Ahmad Al Khleifat
2020	J	`jnl`	Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive. F1000Research Matthew N. Bernstein, Ariella L. Gladstein, Khun Zaw Latt, Emily Clough, Ben Busby, Allissa Dillman
2019	J	`jnl`	Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases. F1000Research Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun A. Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang
2019	J	`jnl`	Magic-BLAST, an accurate RNA-seq aligner for long and short reads. BMC Bioinform. Grzegorz M. Boratyn, Jean Thierry-Mieg, Danielle Thierry-Mieg, Ben Busby, Thomas L. Madden
2019	J	`jnl`	Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. Thomas L. Madden, Ben Busby, Jian Ye
2018	J	`jnl`	Matchmaking in Bioinformatics. F1000Research Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers
2018	J	`jnl`	NovoGraph: Genome graph construction from multiple long-read F1000Research Evan Biederstedt, Jeffrey C. Oliver, Nancy F. Hansen, Aarti Jajoo, Nathan A. Dunn, Andrew Olson, Ben Busby, Alexander T. Dilthey
2017	J	`jnl`	DangerTrack: A scoring system to detect difficult-to-assess regions. F1000Research Igor Dolgalev, Fritz J. Sedlazeck, Ben Busby
2017	J	`jnl`	Extending TCGA queries to automatically identify analogous genomic data from dbGaP. F1000Research Erin K. Wagner, Satyajeet Raje, Liz Amos, Jessica Kurata, Abhijit Badve, Yingquan Li, Ben Busby
2017	Misc	`conf`	Harmonizing User-defined Phenotypic Variables using Latent Semantic Analysis (LSA) to Improve Data Discoverability in dbGaP. AMIA Liz Amos, Satyajeet Raje, Masato Kimura, Preeti G. Kochar, Victoria Wilder, Ben Busby
2017	Misc	`conf`	MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed. AMIA Satyajeet Raje, Ravi Teja Bhupatiraju, Abdelrahman Hosny, Ben Busby
2017	J	`jnl`	PubRunner: A light-weight framework for updating text mining results. F1000Research Kishore R. Anekalla, J. P. Courneya, Nicolas Fiorini, Jake Lever, Michael Muchow, Ben Busby
2017	J	`jnl`	Viewing RNA-seq data on the entire human genome. F1000Research Eric M. Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby
2016	J	`jnl`	A cloud-based learning environment for comparing RNA-seq aligners. F1000Research Elizabeth Baskin, Peter De-Ford, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby
2016	J	`jnl`	Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping. F1000Research Ben Busby, Matthew Lesko, Lisa Federer
2016	J	`jnl`	MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis. F1000Research Eric Moyer, Megan Hastings Hagenauer, Matthew Lesko, Felix Francis, Oscar Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby