Bastien Rance

43 papers C 1Misc 6Journal 15Unranked 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
Enhancing clinical data warehousing with provenance data to support longitudinal analyses and large file management: The gitOmmix approach for genomic and image data.
J. Biomed. Informatics
Maxime Wack, Adrien Coulet, Anita Burgun, Bastien Rance
2024 J jnl
Facilitating phenotyping from clinical texts: the medkit library.
Bioinform.
Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024 J jnl
Facilitating phenotyping from clinical texts: the medkit library.
CoRR
Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024 — conf
Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings.
SWAT4HCLS
Jong Ho Jhee, Alice Rogier, Dune Giraud, Emma Pinet, Brigitte Sabatier, Bastien Rance, Adrien Coulet
2024 J jnl
Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning.
CoRR
Lillian Muyama, Estelle Lu, Geoffrey Cheminet, Jacques Pouchot, Bastien Rance, Anne-Isabelle Tropeano, Antoine Neuraz, Adrien Coulet
2023 — conf
Event-independent temporal positioning: application to French clinical text.
BioNLP@ACL
Nesrine Bannour, Bastien Rance, Xavier Tannier, Aurélie Névéol
2023 — conf
Positionnement temporel indépendant des évènements : application à des textes cliniques en français.
CORIA-TALN (2)
Nesrine Bannour, Xavier Tannier, Bastien Rance, Aurélie Névéol
2022 — ed.
Challenges of Trustable AI and Added-Value on Health - Proceedings of MIE 2022, Medical Informatics Europe, Nice, France, May 27-30, 2022.
MIE
Brigitte Séroussi, Patrick Weber, Ferdinand Dhombres, Cyril Grouin, Jan-David Liebe, Sylvia Pelayo, Andrea Pinna, Bastien Rance, Lucia Sacchi, Adrien Ugon, Arriel Benis, Parisis Gallos
2022 — conf
Extraction of Tumor Response Criteria in Semi-Structured Imaging Report.
MIE
Valentin Pohyer, David Baudoin, Laure Fournier, Bastien Rance
2022 Misc conf
How to improve cancer Patients ENrollment within clinical trials from rEal Life databases using the OMOP oncology Extension: the French PENELOPE initiative.
AMIA
Emmanuelle Kempf, Morgan Vaterkowski, Nicolas Griffon, Damien Leprovost, Stéphane Bréant, Patricia Serre, Alexandre Mouchet, Rafael Gozlan, Bastien Rance, Gilles Chatellier, Ali Bellamine, Marie Frank, Martin Hilka, Julien Guerin, Xavier Tannier, Alain Livartowski, Christel Daniel
2022 J jnl
Privacy-preserving mimic models for clinical named entity recognition in French.
J. Biomed. Informatics
Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol
2022 — conf
viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome.
MIE
Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, Alain Nicolas, Jessica Zucman-Rossi, Sandrine Imbeaud, Anita Burgun, Hélène Péré, Bastien Rance
2021 J jnl
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.
BMC Medical Informatics Decis. Mak.
Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun
2021 Misc conf
Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.
AMIA
William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021 J jnl
Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.
J. Am. Medical Informatics Assoc.
William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021 — conf
Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs.
MedInfo
Alice Rogier, Adrien Coulet, Bastien Rance
2020 — conf
The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.
MIE
Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019 — conf
Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task?
MedInfo
Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019 — conf
Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital.
MedInfo
William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance
2019 J jnl
What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse.
Comput. Methods Programs Biomed.
Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, Jean-Louis Paul, Laëtitia Mauge, Nadia Rivet, Angela Bonifati, Gilles Chatellier, Anita Burgun, Bastien Rance
2018 J jnl
A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse.
J. Biomed. Informatics
Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance
2018 — conf
Designing Scientific SPARQL Queries Using Autocompletion by Snippets.
eScience
Karima Rafes, Serge Abiteboul, Sarah Cohen Boulakia, Bastien Rance
2018 — conf
The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest.
MIE
Rodolphe Jantzen, Bastien Rance, Sandrine Katsahian, Anita Burgun, Vincent Looten
2017 J jnl
A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease.
BMC Medical Informatics Decis. Mak.
Jean-Baptiste Escudié, Bastien Rance, Georgia Malamut, Sherine Khater, Anita Burgun, Christophe Cellier, Anne-Sophie Jannot
2017 J jnl
Exploring and visualizing multidimensional data in translational research platforms.
Briefings Bioinform.
William Dunn Jr, Anita Burgun, Marie-Odile Krebs, Bastien Rance
2016 J jnl
Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure.
Appl. Clin. Inform.
Vincent Canuel, Hector Countouris, Pierre Laurent-Puig, Anita Burgun, Bastien Rance
2015 — conf
Fingerprinting Biomedical Terminologies - Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles.
MedInfo
Bastien Rance, Thai Le, Olivier Bodenreider
2015 Misc conf
Reviewing 741 patients records in two hours with FASTVISU.
AMIA
Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance
2015 J jnl
Translational research platforms integrating clinical and omics data: a review of publicly available solutions.
Briefings Bioinform.
Vincent Canuel, Bastien Rance, Paul Avillach, Patrice Degoulet, Anita Burgun
2014 — conf
ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data.
DILS
Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen Boulakia
2014 Misc conf
How to de-identify a large clinical corpus in 10 days.
AMIA
Cyril Grouin, Louise Deléger, Jean-Baptiste Escudié, Gregory Groisy, Anne-Sophie Jannot, Bastien Rance, Xavier Tannier, Aurélie Névéol
2013 Misc conf
A systematic comparison of current sources of disease knowledge.
AMIA
Aurélie Névéol, Bastien Rance, Zhiyong Lu
2013 — conf
Leveraging Terminological Resources for Mapping between Rare Disease Information Sources.
MedInfo
Bastien Rance, Michelle Snyder, Janine Lewis, Olivier Bodenreider
2013 Misc conf
Network Visualization of UMLS Source Vocabularies using Semantic Groups.
AMIA
Thai Le, Bastien Rance, Olivier Bodenreider
2012 J jnl
A mutation-centric approach to identifying pharmacogenomic relations in text.
J. Biomed. Informatics
Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider
2012 — ed.
Data Integration in the Life Sciences - 8th International Conference, DILS 2012, College Park, MD, USA, June 28-29, 2012. Proceedings
DILS
Olivier Bodenreider, Bastien Rance
2011 — conf
A Knowledge-Based Approach to Medical Records Retrieval.
TREC
Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson
2011 J jnl
Integrating clinical research with the Healthcare Enterprise: From the RE-USE project to the EHR4CR platform.
J. Biomed. Informatics
Abdennaji El Fadly, Bastien Rance, Noël Lucas, Charles N. Mead, Gilles Chatellier, Pierre-Yves Lastic, Marie-Christine Jaulent, Christel Daniel
2010 — conf
The REUSE project: EHR as single datasource for biomedical research.
MedInfo
Abdennaji El Fadly, Noël Lucas, Bastien Rance, Philippe Verplancke, Pierre-Yves Lastic, Christel Daniel
2009 — conf
An Adaptive Combination of Matchers: Application to the Mapping of Biological Ontologies for Genome Annotation.
DILS
Bastien Rance, Jean-François Gibrat, Christine Froidevaux
2009 — conf
Improving Bio-Ontologies Matching Using Types and Adaptive Weights.
OM
Bastien Rance, Christine Froidevaux
2009 — —
Recherche d'associations séquentielles et alignement d'ontologies biologiques. (Search of sequential associations and biological ontologies alignment).
Bastien Rance
2007 C conf
Extracting Sequential Nuggets of Knowledge.
DEXA
Christine Froidevaux, Frédérique Lisacek, Bastien Rance