Baskar Ganapathysubramanian

151 papers A* 4A 6C 3Journal 128Unranked 10

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A shifted boundary method for thermal flows. J. Comput. Phys. Cheng-Hau Yang, Guglielmo Scovazzi, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	AgGym: An agricultural biotic stress simulation environment for ultra-precision management planning. Comput. Electron. Agric. Mahsa Khosravi, Matthew E. Carroll, Kai Liang Tan, Liza Van der Laan, Joscif Raigne, Daren S. Mueller, Arti Singh, Aditya Balu, Baskar Ganapathysubramanian, Asheesh Kumar Singh, Soumik Sarkar
2026	J	`jnl`	Field conserving adaptive mesh refinement (AMR) scheme on massively parallel adaptive octree meshes. CoRR Kumar Saurabh, Makrand A. Khanwale, Masado Ishii, Hari Sundar, Baskar Ganapathysubramanian
2026	J	`jnl`	GENIE: Gram-Eigenmode INR Editing with Closed-Form Geometry Updates. CoRR Samundra Karki, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	HS-3D-NeRF: 3D Surface and Hyperspectral Reconstruction From Stationary Hyperspectral Images Using Multi-Channel NeRFs. CoRR Kibon Ku, Talukder Z. Jubery, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	Mechanics simulation with Implicit Neural Representations of complex geometries. Comput. Aided Des. Samundra Karki, Ming-Chen Hsu, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	Neural Geometry for PDEs: Regularity, Stability, and Convergence Guarantees. CoRR Samundra Karki, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	Simulating incompressible flows over complex geometries using the shifted boundary method with incomplete adaptive octree meshes. J. Comput. Phys. Cheng-Hau Yang, Guglielmo Scovazzi, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2026	J	`jnl`	Solving fluid flow problems in space-time with multiscale stabilization: Formulation and examples. Comput. Math. Appl. Biswajit Khara, Robert Dyja, Kumar Saurabh, Anupam Sharma, Baskar Ganapathysubramanian
2026	J	`jnl`	Transformer model to determine spatio-temporal relationships of variables, and interpretability for soybean seed yield, oil, and protein prediction. Frontiers Artif. Intell. Timilehin Ayanlade, Liza Van der Laan, Qisai Liu, Tryambak Gangopadhyay, Johnathon Shook, Arti Singh, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh Kumar Singh
2025	J	`jnl`	3D Neural Operator-Based Flow Surrogates around 3D geometries: Signed Distance Functions and Derivative Constraints. CoRR Ali Rabeh, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	A Semi-Implicit Variational Multiscale Formulation for the Incompressible Navier-Stokes Equations via Exact Adjoint Linearization. CoRR Biswajit Khara, Suresh Murugaiyan, Suriya Dhakshinamoorthy, Makrand A. Khanwale, Ming-Chen Hsu, Baskar Ganapathysubramanian
2025	J	`jnl`	Accelerating space-time methods using physics-informed neural networks. J. Comput. Phys. Abhishek Barman, Biswajit Khara, Baskar Ganapathysubramanian, Anupam Sharma
2025	J	`jnl`	Accessing the Effect of Phyllotaxy and Planting Density on Light Use Efficiency in Field-Grown Maize using 3D Reconstructions. CoRR Nasla Saleem, Talukder Zaki Jubery, Aditya Balu, Yan Zhou, Yawei Li, Patrick S. Schnable, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Advancing AI in Agriculture through Large-Scale Collaborative Research. Commun. ACM Vikram S. Adve, Steve Brown, Alan Fern, Baskar Ganapathysubramanian, Ananth Kalyanaraman, Shashi Shekhar, Ilias Tagkopoulos, Jessica M. Wedow
2025	J	`jnl`	AgriField3D: A Curated 3D Point Cloud and Procedural Model Dataset of Field-Grown Maize from a Diversity Panel. CoRR Elvis Kimara, Mozhgan Hadadi, Jackson Godbersen, Aditya Balu, Talukder Z. Jubery, Yawei Li, Adarsh Krishnamurthy, Patrick S. Schnable, Baskar Ganapathysubramanian
2025	J	`jnl`	Crossmodal learning for Crop Canopy Trait Estimation. CoRR Timilehin Ayanlade, Anirudha Powadi, Talukder Z. Jubery, Baskar Ganapathysubramanian, Soumik Sarkar
2025	J	`jnl`	Direct Flow Simulations with Implicit Neural Representation of Complex Geometry. CoRR Samundra Karki, Mehdi Shadkhah, Cheng-Hau Yang, Aditya Balu, Guglielmo Scovazzi, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Evaluating Molecular Similarity Measures: Do Similarity Measures Reflect Electronic Structure Properties? J. Chem. Inf. Model. Rebekah Duke, Chih-Hsuan Yang, Baskar Ganapathysubramanian, Chad Risko
2025	J	`jnl`	FloraForge: LLM-Assisted Procedural Generation of Editable and Analysis-Ready 3D Plant Geometric Models For Agricultural Applications. CoRR Mozhgan Hadadi, Talukder Z. Jubery, Patrick S. Schnable, Arti Singh, Bedrich Benes, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	FlowBench: A Large Scale Benchmark for Flow Simulation over Complex Geometries. J. Data-centric Mach. Learn. Res. Ronak Tali, Ali Rabeh, Cheng-Hau Yang, Mehdi Shadkhah, Samundra Karki, Abhisek Upadhyaya, Suriya Dhakshinamoorthy, Marjan Saadati, Soumik Sarkar, Adarsh Krishnamurthy, Chinmay Hegde, Aditya Balu, Baskar Ganapathysubramanian
2025	J	`jnl`	Geometry Matters: Benchmarking Scientific ML Approaches for Flow Prediction around Complex Geometries. CoRR Ali Rabeh, Ethan Herron, Aditya Balu, Soumik Sarkar, Chinmay Hegde, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Interpretable Spectral Features Predict Conductivity in Self-Driving Doped Conjugated Polymer Labs. CoRR Ankush Kumar Mishra, Jacob P. Mauthe, Nicholas Luke, Aram Amassian, Baskar Ganapathysubramanian
2025	A	`conf`	Leveraging Vision Language Models for Specialized Agricultural Tasks. WACV Muhammad Arbab Arshad, Talukder Zaki Jubery, Tirtho Roy, Rim Nassiri, Asheesh K. Singh, Arti Singh, Chinmay Hegde, Baskar Ganapathysubramanian, Aditya Balu, Adarsh Krishnamurthy, Soumik Sarkar
2025	J	`jnl`	MPFBench: A Large Scale Dataset for SciML of Multi-Phase-Flows: Droplet and Bubble Dynamics. J. Data-centric Mach. Learn. Res. Mehdi Shadkhah, Ronak Tali, Ali Rabeh, Cheng-Hau Yang, Ethan Herron, Abhisek Upadhyaya, Adarsh Krishnamurthy, Chinmay Hegde, Aditya Balu, Baskar Ganapathysubramanian
2025	J	`jnl`	MaizeEar-SAM: Zero-Shot Maize Ear Phenotyping. CoRR Hossein Zaremehrjerdi, Lisa Coffey, Talukder Z. Jubery, Huyu Liu, Jon Turkus, Kyle Linders, James C. Schnable, Patrick S. Schnable, Baskar Ganapathysubramanian
2025	J	`jnl`	Mechanics Simulation with Implicit Neural Representations of Complex Geometries. CoRR Samundra Karki, Ming-Chen Hsu, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	NeRF-based Point Cloud Reconstruction using a Stationary Camera for Agricultural Applications. CoRR Kibon Ku, Talukder Z. Jubery, Elijah Rodriguez, Aditya Balu, Soumik Sarkar, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Octree-Based Shifted Boundary Method for Multiphysics Simulations Using Linearized Navier-Stokes in Complex Geometries. CoRR Cheng-Hau Yang, Guglielmo Scovazzi, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Optimizing Navigation And Chemical Application in Precision Agriculture With Deep Reinforcement Learning And Conditional Action Tree. CoRR Mahsa Khosravi, Zhanhong Jiang, Joshua R. Waite, Sarah E. Jones, Hernan Torres, Arti Singh, Baskar Ganapathysubramanian, Asheesh Kumar Singh, Soumik Sarkar
2025	J	`jnl`	Predicting Time-Dependent Flow Over Complex Geometries Using Operator Networks. CoRR Ali Rabeh, Suresh Murugaiyan, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Procedural Generation of 3D Maize Plant Architecture from LIDAR Data. CoRR Mozhgan Hadadi, Mehdi Saraeian, Jackson Godbersen, Talukder Z. Jubery, Yawei Li, Lakshmi Attigala, Aditya Balu, Soumik Sarkar, Patrick S. Schnable, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Procedural generation of 3D maize plant architecture from LiDAR data. Comput. Electron. Agric. Mozhgan Hadadi, Mehdi Saraeian, Jackson Godbersen, Talukder Z. Jubery, Yawei Li, Lakshmi Attigala, Aditya Balu, Soumik Sarkar, Patrick S. Schnable, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	—	`conf`	SC-NeRF: NeRF-based Point Cloud Reconstruction using a Stationary Camera for Agricultural Applications. CVPR Workshops Kibon Ku, Talukder Z. Jubery, Elijah Rodriguez, Aditya Balu, Soumik Sarkar, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2025	J	`jnl`	Space-time finite element analysis of the advection-diffusion equation using Galerkin/least-square stabilization. Comput. Math. Appl. Biswajit Khara, Kumar Saurabh, Robert Dyja, Anupam Sharma, Baskar Ganapathysubramanian
2025	J	`jnl`	TerraIncognita: A Dynamic Benchmark for Species Discovery Using Frontier Models. CoRR Shivani Chiranjeevi, Hossein Zaremehrjerdi, Zi K. Deng, Talukder Z. Jubery, Ari Grele, Arti Singh, Asheesh Kumar Singh, Soumik Sarkar, Nirav C. Merchant, Harold F. Greeney, Baskar Ganapathysubramanian, Chinmay Hegde
2025	J	`jnl`	Towards Large Reasoning Models for Agriculture. CoRR Hossein Zaremehrjerdi, Shreyan Ganguly, Ashlyn Rairdin, Elizabeth Tranel, Benjamin Feuer, Juan Ignacio Di Salvo, Srikanth Panthulugiri, Hernan Torres Pacin, Victoria Moser, Sarah Jones, Joscif Raigne, Yanben Shen, Heidi M. Dornath, Aditya Balu, Adarsh Krishnamurthy, Asheesh K. Singh, Arti Singh, Baskar Ganapathysubramanian, Chinmay Hegde, Soumik Sarkar
2025	J	`jnl`	WeedNet: A Foundation Model-Based Global-to-Local AI Approach for Real-Time Weed Species Identification and Classification. CoRR Yanben Shen, Timilehin Ayanlade, Venkata Naresh Boddepalli, Mojdeh Saadati, Ashlyn Rairdin, Zi K. Deng, Muhammad Arbab Arshad, Aditya Balu, Daren S. Mueller, Asheesh K. Singh, Wesley Everman, Nirav C. Merchant, Baskar Ganapathysubramanian, Meaghan Anderson, Soumik Sarkar, Arti Singh
2024	J	`jnl`	A computational framework for transmission risk assessment of aerosolized particles in classrooms. Eng. Comput. Kendrick Tan, Boshun Gao, Cheng-Hau Yang, Emily L. Johnson, Ming-Chen Hsu, Alberto Passalacqua, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2024	J	`jnl`	AIIRA: AI Institute for Resilient Agriculture. AI Mag. Baskar Ganapathysubramanian, Jessica M. P. Bell, George Kantor, Nirav C. Merchant, Soumik Sarkar, Patrick S. Schnable, Michelle Segovia, Arti Singh, Asheesh K. Singh
2024	J	`jnl`	AgEval: A Benchmark for Zero-Shot and Few-Shot Plant Stress Phenotyping with Multimodal LLMs. CoRR Muhammad Arbab Arshad, Talukder Zaki Jubery, Tirtho Roy, Rim Nassiri, Asheesh K. Singh, Arti Singh, Chinmay Hegde, Baskar Ganapathysubramanian, Aditya Balu, Adarsh Krishnamurthy, Soumik Sarkar
2024	J	`jnl`	AgGym: An agricultural biotic stress simulation environment for ultra-precision management planning. CoRR Mahsa Khosravi, Matthew E. Carroll, Kai Liang Tan, Liza Van der Laan, Joscif Raigne, Daren S. Mueller, Arti Singh, Aditya Balu, Baskar Ganapathysubramanian, Asheesh Kumar Singh, Soumik Sarkar
2024	J	`jnl`	Arboretum: A Large Multimodal Dataset Enabling AI for Biodiversity. CoRR Chih-Hsuan Yang, Benjamin Feuer, Zaki Jubery, Zi K. Deng, Andre Nakkab, Md. Zahid Hasan, Shivani Chiranjeevi, Kelly O. Marshall, Nirmal Baishnab, Asheesh K. Singh, Arti Singh, Soumik Sarkar, Nirav C. Merchant, Chinmay Hegde, Baskar Ganapathysubramanian
2024	A*	`conf`	BioTrove: A Large Curated Image Dataset Enabling AI for Biodiversity. NeurIPS Chih-Hsuan Yang, Benjamin Feuer, Talukder Zaki Jubery, Zi K. Deng, Andre Nakkab, Md. Zahid Hasan, Shivani Chiranjeevi, Kelly O. Marshall, Nirmal Baishnab, Asheesh Kumar Singh, Arti Singh, Soumik Sarkar, Nirav C. Merchant, Chinmay Hegde, Baskar Ganapathysubramanian
2024	J	`jnl`	Class-specific Data Augmentation for Plant Stress Classification. CoRR Nasla Saleem, Aditya Balu, Talukder Zaki Jubery, Arti Singh, Asheesh K. Singh, Soumik Sarkar, Baskar Ganapathysubramanian
2024	J	`jnl`	Direct numerical simulation of electrokinetic transport phenomena in fluids: Variational multi-scale stabilization and octree-based mesh refinement. J. Comput. Phys. Sungu Kim, Kumar Saurabh, Makrand A. Khanwale, Ali Mani, Robbyn K. Anand, Baskar Ganapathysubramanian
2024	J	`jnl`	Disentangling Genotype and Environment Specific Latent Features for Improved Trait Prediction using a Compositional Autoencoder. CoRR Anirudha Powadi, Talukder Zaki Jubery, Michael C. Tross, James C. Schnable, Baskar Ganapathysubramanian
2024	J	`jnl`	Evaluating NeRFs for 3D Plant Geometry Reconstruction in Field Conditions. CoRR Muhammad Arbab Arshad, Talukder Z. Jubery, James Afful, Anushrut Jignasu, Aditya Balu, Baskar Ganapathysubramanian, Soumik Sarkar, Adarsh Krishnamurthy
2024	J	`jnl`	FlowBench: A Large Scale Benchmark for Flow Simulation over Complex Geometries. CoRR Ronak Tali, Ali Rabeh, Cheng-Hau Yang, Mehdi Shadkhah, Samundra Karki, Abhisek Upadhyaya, Suriya Dhakshinamoorthy, Marjan Saadati, Soumik Sarkar, Adarsh Krishnamurthy, Chinmay Hegde, Aditya Balu, Baskar Ganapathysubramanian
2024	J	`jnl`	GRATEV2.0: Computational Tools for Real-time Analysis of High-throughput High-resolution TEM (HRTEM) Images of Conjugated Polymers. CoRR Dhruv Gamdha, Ryan Fair, Adarsh Krishnamurthy, Enrique Gomez, Baskar Ganapathysubramanian
2024	J	`jnl`	Latent Diffusion Models for Structural Component Design. Comput. Aided Des. Ethan Herron, Jaydeep Rade, Anushrut Jignasu, Baskar Ganapathysubramanian, Aditya Balu, Soumik Sarkar, Adarsh Krishnamurthy
2024	J	`jnl`	Modeling and simulations of high-density two-phase flows using projection-based Cahn-Hilliard Navier-Stokes equations. CoRR Ali Rabeh, Makrand A. Khanwale, Jonghyun Lee, Baskar Ganapathysubramanian
2024	J	`jnl`	Multi-Sensor and Multi-temporal High-Throughput Phenotyping for Monitoring and Early Detection of Water-Limiting Stress in Soybean. CoRR Sarah E. Jones, Timilehin Ayanlade, Benjamin Fallen, Talukder Z. Jubery, Arti Singh, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh
2024	J	`jnl`	NeuFENet: neural finite element solutions with theoretical bounds for parametric PDEs. Eng. Comput. Biswajit Khara, Aditya Balu, Ameya Joshi, Soumik Sarkar, Chinmay Hegde, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2024	J	`jnl`	Neural PDE Solvers for Irregular Domains. Comput. Aided Des. Biswajit Khara, Ethan Herron, Aditya Balu, Dhruv Gamdha, Chih-Hsuan Yang, Kumar Saurabh, Anushrut Jignasu, Zhanhong Jiang, Soumik Sarkar, Chinmay Hegde, Baskar Ganapathysubramanian, Adarsh Krishnamurthy
2024	J	`jnl`	Robust soybean seed yield estimation using high-throughput ground robot videos. CoRR Jiale Feng, Samuel W. Blair, Timilehin Ayanlade, Aditya Balu, Baskar Ganapathysubramanian, Arti Singh, Soumik Sarkar, Asheesh Kumar Singh
2024	—	`conf`	SDFConnect: Neural Implicit Surface Reconstruction of a Sparse Point Cloud with Topological Constraints. CVPR Workshops Anushrut Jignasu, Aditya Balu, Soumik Sarkar, Chinmay Hegde, Baskar Ganapathysubramanian, Adarsh Krishnamurthy
2024	J	`jnl`	STITCH: Surface reconstrucTion using Implicit neural representations with Topology Constraints and persistent Homology. CoRR Anushrut Jignasu, Ethan Herron, Zhanhong Jiang, Soumik Sarkar, Chinmay Hegde, Baskar Ganapathysubramanian, Aditya Balu, Adarsh Krishnamurthy
2024	J	`jnl`	Simulating incompressible flows over complex geometries using the shifted boundary method with incomplete adaptive octree meshes. CoRR Cheng-Hau Yang, Guglielmo Scovazzi, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2024	A*	`conf`	Slice-100K: A Multimodal Dataset for Extrusion-based 3D Printing. NeurIPS Anushrut Jignasu, Kelly O. Marshall, Ankush Kumar Mishra, Lucas Nerone Rillo, Baskar Ganapathysubramanian, Aditya Balu, Chinmay Hegde, Adarsh Krishnamurthy
2024	J	`jnl`	Slice-100K: A Multimodal Dataset for Extrusion-based 3D Printing. CoRR Anushrut Jignasu, Kelly O. Marshall, Ankush Kumar Mishra, Lucas Nerone Rillo, Baskar Ganapathysubramanian, Aditya Balu, Chinmay Hegde, Adarsh Krishnamurthy
2024	J	`jnl`	Solving fluid flow problems in space-time with multiscale stabilization: formulation and examples. CoRR Biswajit Khara, Robert Dyja, Kumar Saurabh, Anupam Sharma, Baskar Ganapathysubramanian
2024	J	`jnl`	Soybean Maturity Prediction using 2D Contour Plots from Drone based Time Series Imagery. CoRR Bitgoeul Kim, Samuel W. Blair, Talukder Z. Jubery, Soumik Sarkar, Arti Singh, Asheesh Kumar Singh, Baskar Ganapathysubramanian
2023	J	`jnl`	3D reconstruction of plants using probabilistic voxel carving. Comput. Electron. Agric. Jiale Feng, Mojdeh Saadati, Talukder Z. Jubery, Anushrut Jignasu, Aditya Balu, Yawei Li, Lakshmi Attigala, Patrick S. Schnable, Soumik Sarkar, Baskar Ganapathysubramanian, Adarsh Krishnamurthy
2023	J	`jnl`	A projection-based, semi-implicit time-stepping approach for the Cahn-Hilliard Navier-Stokes equations on adaptive octree meshes. J. Comput. Phys. Makrand A. Khanwale, Kumar Saurabh, Masado Ishii, Hari Sundar, James A. Rossmanith, Baskar Ganapathysubramanian
2023	J	`jnl`	Deep learning powered real-time identification of insects using citizen science data. CoRR Shivani Chiranjeevi, Mojdeh Saadati, Zi K. Deng, Jayanth Koushik, Talukder Z. Jubery, Daren S. Mueller, Matthew E. O. Neal, Nirav C. Merchant, Aarti Singh, Asheesh K. Singh, Soumik Sarkar, Arti Singh, Baskar Ganapathysubramanian
2023	J	`jnl`	Deep learning-based 3D multigrid topology optimization of manufacturable designs. Eng. Appl. Artif. Intell. Jaydeep Rade, Anushrut Jignasu, Ethan Herron, Ashton M. Corpuz, Baskar Ganapathysubramanian, Soumik Sarkar, Aditya Balu, Adarsh Krishnamurthy
2023	J	`jnl`	Direct numerical simulation of electrokinetic transport phenomena: variational multi-scale stabilization and octree-based mesh refinement. CoRR Sungu Kim, Kumar Saurabh, Makrand A. Khanwale, Ali Mani, Robbyn K. Anand, Baskar Ganapathysubramanian
2023	J	`jnl`	Generating Finite Element Codes combining Adaptive Octrees with Complex Geometries. CoRR Eric Heisler, Cheng-Hau Yang, Aadesh Deshmukh, Baskar Ganapathysubramanian, Hari Sundar
2023	J	`jnl`	Geometric Modeling and Physics Simulation Framework for Building a Digital Twin of Extrusion-based Additive Manufacturing. CoRR Dhruv Gamdha, Kumar Saurabh, Baskar Ganapathysubramanian, Adarsh Krishnamurthy
2023	J	`jnl`	Latent Diffusion Models for Structural Component Design. CoRR Ethan Herron, Jaydeep Rade, Anushrut Jignasu, Baskar Ganapathysubramanian, Aditya Balu, Soumik Sarkar, Adarsh Krishnamurthy
2023	J	`jnl`	Optimal Surrogate Boundary Selection and Scalability Studies for the Shifted Boundary Method on Octree Meshes. CoRR Cheng-Hau Yang, Kumar Saurabh, Guglielmo Scovazzi, Claudio Canuto, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2023	J	`jnl`	Out-of-distribution detection algorithms for robust insect classification. CoRR Mojdeh Saadati, Aditya Balu, Shivani Chiranjeevi, Talukder Zaki Jubery, Asheesh K. Singh, Soumik Sarkar, Arti Singh, Baskar Ganapathysubramanian
2023	A	`conf`	Scalable adaptive algorithms for next-generation multiphase flow simulations. IPDPS Kumar Saurabh, Masado Ishii, Makrand A. Khanwale, Hari Sundar, Baskar Ganapathysubramanian
2023	J	`jnl`	Space-time finite element analysis of the advection-diffusion equation using Galerkin/least-square stabilization. CoRR Biswajit Khara, Kumar Saurabh, Robert Dyja, Anupam Sharma, Baskar Ganapathysubramanian
2023	J	`jnl`	Towards Foundational AI Models for Additive Manufacturing: Language Models for G-Code Debugging, Manipulation, and Comprehension. CoRR Anushrut Jignasu, Kelly O. Marshall, Baskar Ganapathysubramanian, Aditya Balu, Chinmay Hegde, Adarsh Krishnamurthy
2022	J	`jnl`	A fully-coupled framework for solving Cahn-Hilliard Navier-Stokes equations: Second-order, energy-stable numerical methods on adaptive octree based meshes. Comput. Phys. Commun. Makrand A. Khanwale, Kumar Saurabh, Milinda Fernando, Victor M. Calo, Hari Sundar, James A. Rossmanith, Baskar Ganapathysubramanian
2022	A	`conf`	A scalable adaptive-matrix SPMV for heterogeneous architectures. IPDPS Han D. Tran, Milinda Fernando, Kumar Saurabh, Baskar Ganapathysubramanian, Robert M. Kirby, Hari Sundar
2022	J	`jnl`	Algorithm 1025: PARyOpt: A Software for Parallel Asynchronous Remote Bayesian Optimization. ACM Trans. Math. Softw. Balaji Sesha Sarath Pokuri, Alec Lofquist, Chad Risko, Baskar Ganapathysubramanian
2022	J	`jnl`	CyRSoXS: A GPU-accelerated virtual instrument for Polarized Resonant Soft X-ray Scattering (P-RSoXS). CoRR Kumar Saurabh, Peter J. Dudenas, Eliot Gann, Veronica G. Reynolds, Subhrangsu Mukherjee, Daniel Sunday, Tyler B. Martin, Peter A. Beaucage, Michael L. Chabinyc, Dean M. DeLongchamp, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2022	J	`jnl`	GraSPI: Extensible software for the graph-based quantification of morphology in organic electronics. SoftwareX Devyani Jivani, Jaroslaw Zola, Baskar Ganapathysubramanian, Olga Wodo
2022	J	`jnl`	Neural PDE Solvers for Irregular Domains. CoRR Biswajit Khara, Ethan Herron, Zhanhong Jiang, Aditya Balu, Chih-Hsuan Yang, Kumar Saurabh, Anushrut Jignasu, Soumik Sarkar, Chinmay Hegde, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2022	J	`jnl`	Scalable adaptive algorithms for next-generation multiphase simulations. CoRR Kumar Saurabh, Masado Ishii, Makrand A. Khanwale, Hari Sundar, Baskar Ganapathysubramanian
2022	—	`conf`	Stochastic Conservative Contextual Linear Bandits. CDC Jiabin Lin, Xian Yeow Lee, Talukder Z. Jubery, Shana Moothedath, Soumik Sarkar, Baskar Ganapathysubramanian
2022	J	`jnl`	Stochastic Conservative Contextual Linear Bandits. CoRR Jiabin Lin, Xian Yeow Lee, Talukder Z. Jubery, Shana Moothedath, Soumik Sarkar, Baskar Ganapathysubramanian
2021	J	`jnl`	A projection-based, semi-implicit time-stepping approach for the Cahn-Hilliard Navier-Stokes equations on adaptive octree meshes. CoRR Makrand A. Khanwale, Kumar Saurabh, Masado Ishii, Hari Sundar, James A. Rossmanith, Baskar Ganapathysubramanian
2021	—	`conf`	Case study of SARS-CoV-2 transmission risk assessment in indoor environments using cloud computing resources. SC (Workshops) Kumar Saurabh, Santi Adavani, Kendrick Tan, Masado Ishii, Boshun Gao, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2021	J	`jnl`	Case study of SARS-CoV-2 transmission risk assessment in indoor environments using cloud computing resources. CoRR Kumar Saurabh, Santi Adavani, Kendrick Tan, Masado Ishii, Boshun Gao, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2021	A*	`conf`	Differentiable Spline Approximations. NeurIPS Minsu Cho, Aditya Balu, Ameya Joshi, Anjana Deva Prasad, Biswajit Khara, Soumik Sarkar, Baskar Ganapathysubramanian, Adarsh Krishnamurthy, Chinmay Hegde
2021	J	`jnl`	Differentiable Spline Approximations. CoRR Minsu Cho, Aditya Balu, Ameya Joshi, Anjana Deva Prasad, Biswajit Khara, Soumik Sarkar, Baskar Ganapathysubramanian, Adarsh Krishnamurthy, Chinmay Hegde
2021	J	`jnl`	Distributed Multigrid Neural Solvers on Megavoxel Domains. CoRR Aditya Balu, Sergio Botelho, Biswajit Khara, Vinay Rao, Chinmay Hegde, Soumik Sarkar, Santi Adavani, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2021	A	`conf`	Distributed multigrid neural solvers on megavoxel domains. SC Aditya Balu, Sergio Botelho, Biswajit Khara, Vinay Rao, Soumik Sarkar, Chinmay Hegde, Adarsh Krishnamurthy, Santi Adavani, Baskar Ganapathysubramanian
2021	J	`jnl`	Fast inverse design of microstructures via generative invariance networks. Nat. Comput. Sci. Xian Yeow Lee, Joshua R. Waite, Chih-Hsuan Yang, Balaji Sesha Sarath Pokuri, Ameya Joshi, Aditya Balu, Chinmay Hegde, Baskar Ganapathysubramanian, Soumik Sarkar
2021	J	`jnl`	Industrial scale Large Eddy Simulations with adaptive octree meshes using immersogeometric analysis. Comput. Math. Appl. Kumar Saurabh, Boshun Gao, Milinda Fernando, Songzhe Xu, Makrand A. Khanwale, Biswajit Khara, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2021	J	`jnl`	Iowa Urban FEWS: Integrating Social and Biophysical Models for Exploration of Urban Food, Energy, and Water Systems. Frontiers Big Data Jan Thompson, Baskar Ganapathysubramanian, Wei Chen, Michael C. Dorneich, Philip Gassman, Caroline C. Krejci, Matthew Liebman, Ajay Nair, Ulrike Passe, Nicholas Schwab, Kurt Rosentrater, Tiffanie Stone, Yiming Wang, Yuyu Zhou
2021	J	`jnl`	NeuFENet: Neural Finite Element Solutions with Theoretical Bounds for Parametric PDEs. CoRR Biswajit Khara, Aditya Balu, Ameya Joshi, Soumik Sarkar, Chinmay Hegde, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2021	A	`conf`	Scalable adaptive PDE solvers in arbitrary domains. SC Kumar Saurabh, Masado Ishii, Milinda Fernando, Boshun Gao, Kendrick Tan, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2021	J	`jnl`	Scalable adaptive PDE solvers in arbitrary domains. CoRR Kumar Saurabh, Masado Ishii, Milinda Fernando, Boshun Gao, Kendrick Tan, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2020	J	`jnl`	A fully-coupled framework for solving Cahn-Hilliard Navier-Stokes equations: Second-order, energy-stable numerical methods on adaptive octree based meshes. CoRR Makrand A. Khanwale, Kumar Saurabh, Milinda Fernando, Victor M. Calo, James A. Rossmanith, Hari Sundar, Baskar Ganapathysubramanian
2020	J	`jnl`	Crop Yield Prediction Integrating Genotype and Weather Variables Using Deep Learning. CoRR Johnathon Shook, Tryambak Gangopadhyay, Linjiang Wu, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh
2020	—	`conf`	Deep Generative Models that Solve PDEs: Distributed Computing for Training Large Data-Free Models. MLHPC/AI4S@SC Sergio Botelho, Ameya Joshi, Biswajit Khara, Vinay Rao, Soumik Sarkar, Chinmay Hegde, Santi Adavani, Baskar Ganapathysubramanian
2020	J	`jnl`	Deep Generative Models that Solve PDEs: Distributed Computing for Training Large Data-Free Models. CoRR Sergio Botelho, Ameya Joshi, Biswajit Khara, Soumik Sarkar, Chinmay Hegde, Santi Adavani, Baskar Ganapathysubramanian
2020	J	`jnl`	Deep Multi-view Image Fusion for Soybean Yield Estimation in Breeding Applications Deep Multi-view Image Fusion for Soybean Yield Estimation in Breeding Applications. CoRR Luis G. Riera, Matthew E. Carroll, Zhisheng Zhang, Johnathon M. Shook, Sambuddha Ghosal, Tianshuang Gao, Arti Singh, Sourabh Bhattacharya, Baskar Ganapathysubramanian, Asheesh K. Singh, Soumik Sarkar
2020	J	`jnl`	Determination of the Free Energies of Mixing of Organic Solutions through a Combined Molecular Dynamics and Bayesian Statistics Approach. J. Chem. Inf. Model. Shi Li, Balaji Sesha Sarath Pokuri, Sean M. Ryno, Asare Nkansah, Camron De'vine, Baskar Ganapathysubramanian, Chad M. Risko
2020	J	`jnl`	How useful is Active Learning for Image-based Plant Phenotyping? CoRR Koushik Nagasubramanian, Talukder Z. Jubery, Fateme Fotouhi Ardakani, Seyed Vahid Mirnezami, Asheesh K. Singh, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
2020	J	`jnl`	Industrial scale large eddy simulations (LES) with adaptive octree meshes using immersogeometric analysis. CoRR Kumar Saurabh, Boshun Gao, Milinda Fernando, Songzhe Xu, Biswajit Khara, Makrand A. Khanwale, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian
2020	A*	`conf`	InvNet: Encoding Geometric and Statistical Invariances in Deep Generative Models. AAAI Ameya Joshi, Minsu Cho, Viraj Shah, Balaji Sesha Sarath Pokuri, Soumik Sarkar, Baskar Ganapathysubramanian, Chinmay Hegde
2020	J	`jnl`	Modeling electrochemical systems with weakly imposed Dirichlet boundary conditions. CoRR Sungu Kim, Robbyn K. Anand, Baskar Ganapathysubramanian
2020	J	`jnl`	NURBS-based microstructure design for organic photovoltaics. Comput. Aided Des. Ramin Noruzi, Sambit Ghadai, Onur Rauf Bingol, Adarsh Krishnamurthy, Baskar Ganapathysubramanian
2020	J	`jnl`	Simulating two-phase flows with thermodynamically consistent energy stable Cahn-Hilliard Navier-Stokes equations on parallel adaptive octree based meshes. J. Comput. Phys. Makrand A. Khanwale, Alec D. Lofquist, Hari Sundar, James A. Rossmanith, Baskar Ganapathysubramanian
2020	J	`jnl`	Usefulness of interpretability methods to explain deep learning based plant stress phenotyping. CoRR Koushik Nagasubramanian, Asheesh K. Singh, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
2019	J	`jnl`	Encoding Invariances in Deep Generative Models. CoRR Viraj Shah, Ameya Joshi, Sambuddha Ghosal, Balaji Sesha Sarath Pokuri, Soumik Sarkar, Baskar Ganapathysubramanian, Chinmay Hegde
2019	J	`jnl`	Simulating two-phase flows with thermodynamically consistent energy stable Cahn-Hilliard Navier-Stokes equations on parallel adaptive octree based meshes. CoRR Makrand A. Khanwale, Alec D. Lofquist, Hari Sundar, James A. Rossmanith, Baskar Ganapathysubramanian
2019	A	`conf`	Solving PDEs in space-time: 4D tree-based adaptivity, mesh-free and matrix-free approaches. SC Masado Ishii, Milinda Fernando, Kumar Saurabh, Biswajit Khara, Baskar Ganapathysubramanian, Hari Sundar
2019	C	`conf`	Transfer Operator Based Approach for Estimating After Release Contaminant Distribution in Indoor Environment. ACC Himanshu Sharma, Umesh Vaidya, Baskar Ganapathysubramanian
2018	J	`jnl`	A Novel Multirobot System for Plant Phenotyping. Robotics Tianshuang Gao, Hamid Emadi, Homagni Saha, Jiaoping Zhang, Alec Lofquist, Arti Singh, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh, Sourabh Bhattacharya
2018	J	`jnl`	A Transfer Operator Methodology for Optimal Sensor Placement Accounting for Uncertainty. CoRR Himanshu Sharma, Umesh Vaidya, Baskar Ganapathysubramanian
2018	J	`jnl`	A deep learning framework for causal shape transformation. Neural Networks Kin Gwn Lore, Daniel Stoecklein, Michael Davies, Baskar Ganapathysubramanian, Soumik Sarkar
2018	—	`conf`	An automated tassel detection and trait extraction pipeline to support high-throughput field imaging of maize. ICVGIP Snehal Shete, Srikant Srinivasan, Seyed Vahid Mirnezami, Baskar Ganapathysubramanian, Patrick S. Schnable, Timothy A. Gonsalves
2018	J	`jnl`	An explainable deep machine vision framework for plant stress phenotyping. Proc. Natl. Acad. Sci. USA Sambuddha Ghosal, David Blystone, Asheesh K. Singh, Baskar Ganapathysubramanian, Arti Singh, Soumik Sarkar
2018	—	`conf`	Big Data and Parkinson's Disease: Exploration, Analyses, and Data Challenges. HICSS Mahalakshmi Senthilarumugam Veilukandammal, Sree Nilakanta, Baskar Ganapathysubramanian, Vellareddy Anantharam, Anumantha Kanthasamy, Auriel A. Willette
2018	J	`jnl`	Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning. PLoS Comput. Biol. Naihui Zhou, Zachary D. Siegel, Scott Zarecor, Nigel Lee, Darwin A. Campbell, Carson M. Andorf, Dan Nettleton, Carolyn J. Lawrence-Dill, Baskar Ganapathysubramanian, Jonathan W. Kelly, Iddo Friedberg
2018	J	`jnl`	Explaining hyperspectral imaging based plant disease identification: 3D CNN and saliency maps. CoRR Koushik Nagasubramanian, Sarah E. Jones, Asheesh K. Singh, Arti Singh, Baskar Ganapathysubramanian, Soumik Sarkar
2018	J	`jnl`	Flow Shape Design for Microfluidic Devices Using Deep Reinforcement Learning. CoRR Xian Yeow Lee, Aditya Balu, Daniel Stoecklein, Baskar Ganapathysubramanian, Soumik Sarkar
2018	J	`jnl`	Interpretable deep learning for guided structure-property explorations in photovoltaics. CoRR Balaji Sesha Sarath Pokuri, Sambuddha Ghosal, Apurva Kokate, Baskar Ganapathysubramanian, Soumik Sarkar
2018	J	`jnl`	PARyOpt: A software for Parallel Asynchronous Remote Bayesian Optimization. CoRR Balaji Sesha Sarath Pokuri, Alec Lofquist, Chad M. Risko, Baskar Ganapathysubramanian
2018	—	`conf`	PIRM2018 Challenge on Spectral Image Super-Resolution: Methods and Results. ECCV Workshops (5) Mehrdad Shoeiby, Antonio Robles-Kelly, Radu Timofte, Ruofan Zhou, Fayez Lahoud, Sabine Süsstrunk, Zhiwei Xiong, Zhan Shi, Chang Chen, Dong Liu, Zheng-Jun Zha, Feng Wu, Kaixuan Wei, Tao Zhang, Lizhi Wang, Ying Fu, Koushik Nagasubramanian, Asheesh K. Singh, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
2018	J	`jnl`	Parallel-In-Space-Time, Adaptive Finite Element Framework for Nonlinear Parabolic Equations. SIAM J. Sci. Comput. Robert Dyja, Baskar Ganapathysubramanian, Kristoffer G. van der Zee
2018	J	`jnl`	Physics-aware Deep Generative Models for Creating Synthetic Microstructures. CoRR Rahul Singh, Viraj Shah, Balaji Sesha Sarath Pokuri, Soumik Sarkar, Baskar Ganapathysubramanian, Chinmay Hegde
2018	J	`jnl`	Predicting County Level Corn Yields Using Deep Long Short Term Memory Models. CoRR Zehui Jiang, Chao Liu, Nathan P. Hendricks, Baskar Ganapathysubramanian, Dermot J. Hayes, Soumik Sarkar
2018	C	`conf`	Transfer Operator Theoretic Framework for Monitoring Building Indoor Environment in Uncertain Operating Conditions. ACC Himanshu Sharma, Anthony D. Fontanini, Umesh Vaidya, Baskar Ganapathysubramanian
2018	J	`jnl`	Transfer Operator Theoretic Framework for Monitoring Building Indoor Environment in Uncertain Operating Conditions. CoRR Himanshu Sharma, Anthony D. Fontanini, Umesh Vaidya, Baskar Ganapathysubramanian
2017	J	`jnl`	A finite element approach to self-consistent field theory calculations of multiblock polymers. J. Comput. Phys. David M. Ackerman, Kris T. Delaney, Glenn H. Fredrickson, Baskar Ganapathysubramanian
2017	J	`jnl`	Hyperspectral band selection using genetic algorithm and support vector machines for early identification of charcoal rot disease in soybean. CoRR Koushik Nagasubramanian, Sarah E. Jones, Soumik Sarkar, Asheesh K. Singh, Arti Singh, Baskar Ganapathysubramanian
2017	J	`jnl`	Interpretable Deep Learning applied to Plant Stress Phenotyping. CoRR Sambuddha Ghosal, David Blystone, Asheesh K. Singh, Baskar Ganapathysubramanian, Arti Singh, Soumik Sarkar
2016	J	`jnl`	A Bayesian Network approach to County-Level Corn Yield Prediction using historical data and expert knowledge. CoRR Vikas Chawla, Hsiang Sing Naik, Adedotun Akintayo, Dermot Hayes, Patrick S. Schnable, Baskar Ganapathysubramanian, Soumik Sarkar
2016	J	`jnl`	An end-to-end convolutional selective autoencoder approach to Soybean Cyst Nematode eggs detection. CoRR Adedotun Akintayo, Nigel Lee, Vikas Chawla, Mark Mullaney, Christopher Marett, Asheesh K. Singh, Arti Singh, Greg Tylka, Baskar Ganapathysubramanian, Soumik Sarkar
2016	J	`jnl`	Deep Action Sequence Learning for Causal Shape Transformation. CoRR Kin Gwn Lore, Daniel Stoecklein, Michael Davies, Baskar Ganapathysubramanian, Soumik Sarkar
2015	J	`jnl`	A Novel Framework for Visual Detection and Exploration of Performance Bottlenecks in Organic Photovoltaic Solar Cell Materials. Comput. Graph. Forum Amal Aboulhassan, Daniel Baum, Olga Wodo, Baskar Ganapathysubramanian, Aram Amassian, Markus Hadwiger
2015	—	`conf`	Hierarchical Feature Extraction for Efficient Design of Microfluidic Flow Patterns. FE@NIPS Kin Gwn Lore, Daniel Stoecklein, Michael Davies, Baskar Ganapathysubramanian, Soumik Sarkar
2015	J	`jnl`	Parallel Framework for Dimensionality Reduction of Large-Scale Datasets. Sci. Program. Sai Kiranmayee Samudrala, Jaroslaw Zola, Srinivas Aluru, Baskar Ganapathysubramanian
2014	J	`jnl`	Federated Computing for the Masses-Aggregating Resources to Tackle Large-Scale Engineering Problems. Comput. Sci. Eng. Javier Diaz Montes, Yu Xie, Ivan Rodero, Jaroslaw Zola, Baskar Ganapathysubramanian, Manish Parashar
2011	J	`jnl`	Computationally efficient solution to the Cahn-Hilliard equation: Adaptive implicit time schemes, mesh sensitivity analysis and the 3D isoperimetric problem. J. Comput. Phys. Olga Wodo, Baskar Ganapathysubramanian
2011	C	`conf`	Rapid online quantification of tip-sample interaction for high-speed dynamic-mode atomic force microscope imaging. ACC David Busch, Juan Ren, Qingze Zou, Baskar Ganapathysubramanian
2009	J	`jnl`	A stochastic multiscale framework for modeling flow through random heterogeneous porous media. J. Comput. Phys. Baskar Ganapathysubramanian, Nicholas Zabaras
2009	—	`conf`	Transfer operator method for control in fluid flows. CDC Umesh Vaidya, Baskar Ganapathysubramanian, Arvind U. Raghunathan
2008	J	`jnl`	A non-linear dimension reduction methodology for generating data-driven stochastic input models. J. Comput. Phys. Baskar Ganapathysubramanian, Nicholas Zabaras
2008	J	`jnl`	A scalable framework for the solution of stochastic inverse problems using a sparse grid collocation approach. J. Comput. Phys. Nicholas Zabaras, Baskar Ganapathysubramanian
2007	J	`jnl`	Modeling diffusion in random heterogeneous media: Data-driven models, stochastic collocation and the variational multiscale method. J. Comput. Phys. Baskar Ganapathysubramanian, Nicholas Zabaras
2007	J	`jnl`	Sparse grid collocation schemes for stochastic natural convection problems. J. Comput. Phys. Baskar Ganapathysubramanian, Nicholas Zabaras
2006	J	`jnl`	Modelling dendritic solidification with melt convection using the extended finite element method. J. Comput. Phys. Nicholas Zabaras, Baskar Ganapathysubramanian, Lijian Tan