Bas E. Dutilh

16 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Chemical characteristics vectors map the chemical space of natural biomes from untargeted mass spectrometry data.
J. Cheminformatics
Pilleriin Peets, Aristeidis Litos, Kai Dührkop, Daniel R. Garza, Justin J. J. van der Hooft, Sebastian Böcker, Bas E. Dutilh
2021 J jnl
Finding functional associations between prokaryotic virus orthologous groups: a proof of concept.
BMC Bioinform.
Nikolaos Pappas, Bas E. Dutilh
2021 J jnl
OGRE: Overlap Graph-based metagenomic Read clustEring.
Bioinform.
Marleen Balvert, Xiao Luo, Ernestina Hauptfeld, Alexander Schönhuth, Bas E. Dutilh
2021 J jnl
RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.
Patterns
Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert A. Edwards, Francisco Rodríguez-Valera
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2019 J jnl
A Drug Recommendation System (Dr.S) for cancer cell lines.
CoRR
Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M. Deist, Christine Eyler, Bas E. Dutilh, Alexander Schönhuth, David Craft
2019 J jnl
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype.
Bioinform.
Bojian Yin, Marleen Balvert, Rick A. A. van der Spek, Bas E. Dutilh, Sander M. Bohté, Jan Veldink, Alexander Schönhuth
2018 — conf
Metagenomic read clustering based on overlap graphs.
ICCABS
Marleen Balvert, Alexander Schönhuth, Bas E. Dutilh
2016 J jnl
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.
Bioinform.
Genivaldo Gueiros Z. Silva, Kevin T. Green, Bas E. Dutilh, Robert A. Edwards
2015 J jnl
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
BMC Bioinform.
Qingzhen Hou, Bas E. Dutilh, Martijn A. Huynen, Jaap Heringa, K. Anton Feenstra
2013 J jnl
Combining de novo and reference-guided assembly with scaffold_builder.
Source Code Biol. Medicine
Genivaldo Gueiros Z. Silva, Bas E. Dutilh, T. David Matthews, Keri Elkins, Robert Schmieder, Elizabeth A. Dinsdale, Robert A. Edwards
2012 J jnl
Reference-independent comparative metagenomics using cross-assembly: crAss.
Bioinform.
Bas E. Dutilh, Robert Schmieder, James Nulton, Ben Felts, Peter Salamon, Robert A. Edwards, John Mokili
2011 J jnl
FACIL: Fast and Accurate Genetic Code Inference and Logo.
Bioinform.
Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen
2009 J jnl
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
Bioinform.
Bas E. Dutilh, Martijn A. Huynen, Marc Strous
2008 J jnl
Signature, a web server for taxonomic characterization of sequence samples using signature genes.
Nucleic Acids Res.
Bas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen
2007 J jnl
Assessment of phylogenomic and orthology approaches for phylogenetic inference.
Bioinform.
Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen