Barry Smith - RankMe

199 papers A* 1B 4C 11Misc 10Journal 76Unranked 92

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	About the Unreal. JOWO John Beverley, Jim Logan, Barry Smith
2025	—	`conf`	Comparing Information Exchange Standard and Basic Formal Ontology Design Patterns. JOWO Ian Bailey, John Beverley, Helena Blackmore, Andreas Cola, Paul Cripps, Giacomo De Colle, Federico Donato, Amanda Hicks, David Limbaugh, Elena Milivinti, Chris Partridge, Rebecca Rafferty, Barry Smith
2025	J	`jnl`	Unreal Patterns. CoRR John Beverley, Jim Logan, Barry Smith
2024	J	`jnl`	Capabilities. CoRR John Beverley, Peter Koch, David Limbaugh, Barry Smith
2024	—	`conf`	Capabilities: An ontology. JOWO John Beverley, David Limbaugh, Eric Merrell, Peter Koch, Barry Smith
2024	J	`jnl`	Middle Architecture Criteria. CoRR John Beverley, Giacomo De Colle, Mark Jensen, Carter Benson, Barry Smith
2024	—	`conf`	Middle architecture criteria. JOWO John Beverley, Giacomo De Colle, Mark Jensen, Carter-Beau Benson, Barry Smith
2024	—	`conf`	Ontologies, arguments, and large-language models (short paper). JOWO John Beverley, Francesco Franda, Mohammed Hedi Karray, Dan Maxwell, Carter-Beau Benson, Barry Smith
2023	—	`conf`	Beyond the Goods-Service Continuum. ICBO Peter Koch, Barry Smith
2023	J	`jnl`	Ontology of language, with applications to demographic data. Appl. Ontology S. Clint Dowland, Barry Smith, Matthew Diller, Jobst Landgrebe, William R. Hogan
2023	J	`jnl`	Why machines do not understand: A response to Søgaard. CoRR Jobst Landgrebe, Barry Smith
2022	J	`jnl`	A Semantics-Based Common Operational Command System for Multiagency Disaster Response. IEEE Trans. Engineering Management Linda Elmhadhbi, Mohamed-Hedi Karray, Bernard Archimède, J. Neil Otte, Barry Smith
2022	J	`jnl`	A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2022	—	`conf`	AlphaFold, AI and Ontologies. ICBO Barry Smith
2022	—	`conf`	Coordinating Coronavirus Research: The Virus Infectious Disease Ontology. ICBO John Beverley, Yongqun He, Barry Smith, Shane Babcock, Eric Merrell, Lindsay G. Cowell, Regina Hurley, Sebastian Deusing
2022	J	`jnl`	Ontology-Driven Multicriteria Decision Support for Victim Evacuation. Int. J. Inf. Technol. Decis. Mak. Linda Elmhadhbi, Mohamed-Hedi Karray, Bernard Archimède, J. Neil Otte, Barry Smith
2022	—	`conf`	The Industrial Ontologies Foundry (IOF) Core Ontology. FOMI Milos Drobnjakovic, Boonserm (Serm) Kulvatunyou, Farhad Ameri, Chris Will, Barry Smith, Albert T. Jones
2022	—	`conf`	What is a Service? (abstract). JOWO Barry Smith, Peter Koch
2021	J	`jnl`	An Ontological Approach to Enhancing Information Sharing in Disaster Response. Inf. Linda Elmhadhbi, Mohamed-Hedi Karray, Bernard Archimède, J. Neil Otte, Barry Smith
2021	J	`jnl`	An argument for the impossibility of machine intelligence. CoRR Jobst Landgrebe, Barry Smith
2021	J	`jnl`	BFO-based ontology enhancement to promote interoperability in BIM. Appl. Ontology Justine Flore Tchouanguem Djuedja, Mohamed-Hedi Karray, Bernard Kamsu-Foguem, Camille Magniont, F. Henry Abanda, Barry Smith
2021	—	`conf`	Benefits of Realist Ontologies to Systems Engineering. JOWO Eric C. Merrell, Robert M. Kelly, David Kasmier, Barry Smith, Marc Brittain, Ronald Ankner, Evan Maki, Curtis W. Heisey, Kevin Bush
2021	—	`conf`	Common Core Conformant Definitions for an Ontology of Commercial Exchange. JOWO Eric C. Merrell, Olivier Massin, Barry Smith
2021	J	`jnl`	Enriching the functionally graded materials (FGM) ontology for digital manufacturing. Int. J. Prod. Res. Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Francesco Furini, Rahul Rai, J. Neil Otte, Barry Smith
2021	J	`jnl`	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters
2021	—	`conf`	Ontology of Plays for Autonomous Teaming and Collaboration. ONTOBRAS David Kasmier, Eric Merrell, Robert M. Kelly, Barry Smith, Curtis W. Heisey, Donald Evan Maki, Marc Brittain, Ronald Ankner, Kevin Bush
2021	J	`jnl`	The Infectious Disease Ontology in the age of COVID-19. J. Biomed. Semant. Shane Babcock, John Beverley, Lindsay G. Cowell, Barry Smith
2020	—	`conf`	CIDO: The Community-Based Coronavirus Infectious Disease Ontology. ICBO/ODLS Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2020	—	`conf`	CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. ICBO/ODLS Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil
2020	C	`conf`	Conceptual Space Modeling for Space Event Characterization. FUSION Jeremy R. Chapman, David Kasmier, David Limbaugh, Stephen R. Gagnon, John L. Crassidis, James Llinas, Barry Smith, Alexander P. Cox
2020	J	`jnl`	Ontology and Cognitive Outcomes. CoRR David Limbaugh, David Kasmier, Ronald Rudnicki, James Llinas, Barry Smith
2020	—	`conf`	The Industrial Ontologies Foundry (IOF) Perspectives. I-ESA Workshops Mohamed-Hedi Karray, J. Neil Otte, Dimitris Kiritsis, Farhad Ameri, Boonserm Kulvatunyou, Chris Will, Rebeca Arista, Rahul Rai, Barry Smith
2019	—	`conf`	A First-Order Logic Formalization of the Industrial Ontologies Foundry Signature Using Basic Formal Ontology. JOWO Barry Smith, Farhad Ameri, Hyunmin Cheong, Dimitris Kiritsis, Dusan Sormaz, Chris Will, J. Neil Otte
2019	J	`jnl`	A product life cycle ontology for additive manufacturing. Comput. Ind. Munira Mohd Ali, Rahul Rai, J. Neil Otte, Barry Smith
2019	J	`jnl`	An ontological approach to representing the product life cycle. Appl. Ontology J. Neil Otte, Dimitris Kiritsis, Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Ron Rudnicki, Rahul Rai, Barry Smith
2019	—	`conf`	Foundation for a Realist Ontology of Cognitive Processes. ICBO David Kasmier, David Limbaugh, Barry Smith
2019	J	`jnl`	Making AI meaningful again. CoRR Jobst Landgrebe, Barry Smith
2019	—	`conf`	Mental Capabilities. ICBO Eric Merrell, David Limbaugh, Alex Anderson, Barry Smith
2019	J	`jnl`	OHMI: the ontology of host-microbiome interactions. J. Biomed. Semant. Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko, Jihad S. Obeid
2019	—	`conf`	Ontology as Product-Service System: Lessons Learned from GO, BFO and DOLCE. ICBO Barry Smith
2019	J	`jnl`	There is no general AI: Why Turing machines cannot pass the Turing test. CoRR Jobst Landgrebe, Barry Smith
2019	—	`conf`	Toward an Ontology of Commercial Exchange. JOWO Jonathan Vajda, Eric Merrell, Barry Smith
2019	—	`conf`	Warranted Diagnosis. ICBO David Limbaugh, David Kasmier, Werner Ceusters, Barry Smith
2018	J	`jnl`	Biomedical ontology alignment: an approach based on representation learning. J. Biomed. Semant. Prodromos Kolyvakis, Alexandros Kalousis, Barry Smith, Dimitris Kiritsis
2018	—	`conf`	On Defining Bruxism. MIE Werner Ceusters, Barry Smith
2018	J	`jnl`	Ontology-based fusion of sensor data and natural language. Appl. Ontology Erik Thomsen, Barry Smith
2018	—	`conf`	Standardization of the Histopathology Cancer Report: An Ontological Approach. ICBO Anna Maria Masci, Shannon McCall, Alessandro Racioppi, Helena Judge Ellis, Jihad S. Obeid, Barry Smith, Christian J. Stoeckert Jr., Jie Zheng
2018	—	`conf`	The Industrial Ontologies Foundry Proof-of-Concept Project. APMS (2) Boonserm (Serm) Kulvatunyou, Evan Wallace, Dimitris Kiritsis, Barry Smith, Chris Will
2018	J	`jnl`	The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Res. Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios V. Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud, Pankaj Jaiswal
2017	—	`conf`	A Diagrammatic Representation for Entities and Mereotopological Relations in Ontologies. ONTOBRAS José Maria Parente de Oliveira, Barry Smith
2017	—	`conf`	A Visual Representation of Part-Whole Relationships in BFO-Conformant Ontologies. WorldCIST (1) José M. Parente de Oliveira, Barry Smith
2017	J	`jnl`	Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. J. Biomed. Informatics Metin N. Gurcan, John Tomaszewski, James A. Overton, Scott Doyle, Alan Ruttenberg, Barry Smith
2017	J	`jnl`	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Res. Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan P. Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Qinghua Wang, Jian Zhang, Abdelrahman Elsayed, Cathy H. Wu
2016	—	`conf`	Dealing with Elements of Medical Encounters: an Approach Based on the Ontological Realism. ICBO/BioCreative Fernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith
2016	—	`conf`	Dealing with Social and Legal Entities in the Obstetric and Neonatal Domain. ICBO/BioCreative Fernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith
2016	J	`jnl`	Functions in Basic Formal Ontology. Appl. Ontology Andrew D. Spear, Werner Ceusters, Barry Smith
2016	Misc	`conf`	Interoperability Among Prenatal EHRs: A Formal Ontology Approach. AMIA Fernanda Farinelli, Mauricio Barcellos Almeida, Peter L. Elkin, Barry Smith
2016	J	`jnl`	OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. J. Biomed. Semant. Jingshan Huang, Fernando Gutierrez, Harrison J. Strachan, Dejing Dou, Weili Huang, Barry Smith, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Yu Lin, Bin Wu, Nisansa de Silva, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan, Alan Ruttenberg
2016	—	`conf`	Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion. ICBO/BioCreative Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He
2016	—	`conf`	Permanent Generic Relatedness and Silent Change. JOWO@FOIS Niels Grewe, Ludger Jansen, Barry Smith
2016	C	`conf`	The Functions of Definitions in Ontologies. FOIS Selja Seppälä, Alan Ruttenberg, Barry Smith
2016	—	`conf`	The ImmPort Antibody Ontology. ICBO/BioCreative William D. Duncan, Travis Allen, Jonathan P. Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg, Alexander D. Diehl
2016	J	`jnl`	The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. J. Biomed. Semant. Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A. Blake, Dejing Dou, Weili Huang, Darren A. Natale, Alan Ruttenberg, Jun Huan, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison J. Strachan, Yongqun He, Shaojie Zhang, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan
2016	J	`jnl`	The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. J. Biomed. Semant. Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He
2016	—	`conf`	The Planteome Project. ICBO/BioCreative Laurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John H. Doonan
2016	C	`conf`	The Space Object Ontology. FUSION Alexander P. Cox, Christopher K. Nebelecky, Ronald Rudnicki, William A. Tagliaferri, John L. Crassidis, Barry Smith
2016	—	`conf`	The UNEP Ontologies and the OBO Foundry. ICBO/BioCreative Barry Smith, Mark Jensen
2016	J	`jnl`	The development of non-coding RNA ontology. Int. J. Data Min. Bioinform. Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A. Blake, Dejing Dou, Weili Huang, Darren A. Natale, Alan Ruttenberg, Jun Huan, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison J. Strachan, Nisansa de Silva, Mohan Vamsi Kasukurthi, Vikash Kumar Jha, Yongqun He, Shaojie Zhang, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan
2015	—	`conf`	A domain ontology for the Non-Coding RNA field. BIBM Jingshan Huang, Karen Eilbeck, Judith A. Blake, Dejing Dou, Darren A. Natale, Alan Ruttenberg, Barry Smith, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Yongqun He, Shaojie Zhang, Xiaowei Wang, He Zhang, Zixing Liu, Ming Tan
2015	—	`conf`	A semantic approach for knowledge capture of MIcroRNA-Target gene interactions. BIBM Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang, Zixing Liu, Ming Tan, Alan Ruttenberg
2015	—	`conf`	Aboutness: towards foundations for the Information Artifact Ontology. ICBO Barry Smith, Werner Ceusters
2015	—	`conf`	Biomarkers in the Ontology for General Medical Science. MIE Werner Ceusters, Barry Smith
2015	—	`conf`	Controlled and Uncontrolled English for Ontology Editing. STIDS Brian Donohue, Douglas Kutach, Amardeep Bhattal, Dave Braines, Geeth de Mel, Robert Ganger, Tien Pham, Ron Rudnicki, Barry Smith
2015	—	`conf`	Joint Doctrine Ontology: A Benchmark for Military Information Systems Interoperability. STIDS Peter Morosoff, Ron Rudnicki, Jason Bryant, Robert Farrell, Barry Smith
2014	—	`conf`	An Ontological Approach to Territorial Disputes. STIDS Brian Donohue, J. Neil Otte, Barry Smith
2014	C	`conf`	Applying the Realism-Based Ontology-Versioning Method for Tracking Changes in the Basic Formal Ontology. FOIS Selja Seppälä, Barry Smith, Werner Ceusters
2014	—	`conf`	Clinical Data Wrangling using Ontological Realism and Referent Tracking. ICBO Werner Ceusters, Chiun Yu Hsu, Barry Smith
2014	J	`jnl`	Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Frontiers Neuroinformatics Janna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita E. Bandrowski, Fahim T. Imam, Jessica A. Turner, Maryann E. Martone
2014	J	`jnl`	OAE: The Ontology of Adverse Events. J. Biomed. Semant. Yongqun He, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao, Barry Smith
2014	—	`conf`	OBCS: The Ontology of Biological and Clinical Statistics. ICBO Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He
2014	—	`conf`	Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports. ICBO Albert Goldfain, Barry Smith, Lindsay G. Cowell
2014	—	`conf`	Ontological Support for Living Plan Specification, Execution and Evaluation. STIDS Erik Thomsen, Frederick Reed, William D. Duncan, Tatanya Malyuta, Barry Smith
2014	J	`jnl`	Protein Ontology: a controlled structured network of protein entities. Nucleic Acids Res. Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Carol J. Bult, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, Olivia Helfer, Hongzhan Huang, Anna Maria Masci, Jia Ren, Natalia V. Roberts, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Meher Shruti Yerramalla, Jian Zhang, Aisha AlJanahi, Irem Çelen, Cynthia Gan, Mengxi Lv, Emily Schuster-Lezell, Cathy H. Wu
2013	—	`conf`	IAO-Intel: An Ontology of Information Artifacts in the Intelligence Domain. STIDS Barry Smith, Tatiana Malyuta, Ron Rudnicki, William Mandrick, David Salmen, Peter Morosoff, Danielle K. Duff, James Schoening, Kesny Parent
2013	—	`conf`	Introduction to the Logic of Definitions. VDOS+DO@ICBO Barry Smith
2013	—	`conf`	Ontology Based Annotation of Contextualized Vital Signs. ICBO Albert Goldfain, Min Xu, Jonathan P. Bona, Barry Smith
2013	—	`conf`	Representing Disease Courses: An Application of the Neurological Disease Ontology to Multiple Sclerosis Typology. ICBO Mark Jensen, Alexander P. Cox, Barry Smith, Alexander D. Diehl
2013	J	`jnl`	The environment ontology: contextualising biological and biomedical entities. J. Biomed. Semant. Pier Luigi Buttigieg, Norman Morrison, Barry Smith, Christopher J. Mungall, Suzanna E. Lewis
2013	J	`jnl`	The neurological disease ontology. J. Biomed. Semant. Mark Jensen, Alexander P. Cox, Naveed Chaudhry, Marcus Ng, Donat Sule, William D. Duncan, Patrick Ray, Bianca Weinstock-Guttman, Barry Smith, Alan Ruttenberg, Kinga Szigeti, Alexander D. Diehl
2012	—	`conf`	A plant disease extension of the Infectious Disease Ontology. ICBO Ramona L. Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal
2012	—	`conf`	Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository. ICBO Albert Goldfain, Lindsay G. Cowell, Barry Smith
2012	—	`conf`	Horizontal Integration of Warfighter Intelligence Data: A Shared Semantic Resource for the Intelligence Community. STIDS Barry Smith, Tatiana Malyuta, William Mandrick, Chia Fu, Kesny Parent, Milan Patel
2012	J	`jnl`	The National Center for Biomedical Ontology. J. Am. Medical Informatics Assoc. Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith
2012	—	`conf`	Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. ICBO Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith
2011	—	`conf`	Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen
2011	J	`jnl`	Creating the ontologists of the future. Appl. Ontology Fabian Neuhaus, Elizabeth Florescu, Antony Galton, Michael Grüninger, Nicola Guarino, Leo Obrst, Arturo Sanchez, Amanda Vizedom, Peter Yim, Barry Smith
2011	—	`conf`	Dispositions and Processes in the Emotion Ontology. ICBO Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan
2011	J	`jnl`	Foundations of an ontology of philosophy. Synth. Pierre Grenon, Barry Smith
2011	—	`conf`	Integration of Intelligence Data through Semantic Enhancement. STIDS David Salmen, Tatiana Malyuta, Alan Hansen, Shaun Cronen, Barry Smith
2011	J	`jnl`	On the ontology of functions. Appl. Ontology Stefano Borgo, Riichiro Mizoguchi, Barry Smith
2011	J	`jnl`	Ontologies for clinical and translational research: Introduction. J. Biomed. Informatics Barry Smith, Richard H. Scheuermann
2011	—	`conf`	Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. ICBO Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Natalia V. Roberts, Alan Ruttenberg, Barry Smith, Jian Zhang, Cathy H. Wu
2011	—	`conf`	The Blood Ontology: An Ontology in the Domain of Hematology. ICBO Mauricio Barcellos Almeida, Anna Barbara de Freitas Carneiro Proietti, Jiye Ai, Barry Smith
2011	—	`conf`	The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences. CONTEXT Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan
2011	—	`conf`	The HL7 Approach to Semantic Interoperability. ICBO Jobst Landgrebe, Barry Smith
2011	J	`jnl`	The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Res. Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang, Cathy H. Wu
2011	J	`jnl`	The Representation of Protein Complexes in the Protein Ontology (PRO). BMC Bioinform. Carol J. Bult, Harold J. Drabkin, Alexei V. Evsikov, Darren A. Natale, Cecilia N. Arighi, Natalia V. Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A. Blake, Cathy H. Wu
2011	—	`conf`	Towards a Body Fluids Ontology: A Unified Application Ontology for Basic and Translational Science. ICBO Jiye Ai, Mauricio Barcellos Almeida, André Queiroz de Andrade, Alan Ruttenberg, David Tai Wai Wong, Barry Smith
2011	J	`jnl`	Towards an ontological representation of resistance: The case of MRSA. J. Biomed. Informatics Albert Goldfain, Barry Smith, Lindsay G. Cowell
2010	—	`conf`	A Unified Framework for Biomedical Terminologies and Ontologies. MedInfo Werner Ceusters, Barry Smith
2010	J	`jnl`	Concept Systems and Ontologies: Recommendations for Basic Terminology. Inf. Media Technol. Gunnar O. Klein, Barry Smith
2010	C	`conf`	Dispositions and the Infectious Disease Ontology. FOIS Albert Goldfain, Barry Smith, Lindsay G. Cowell
2010	J	`jnl`	Foundations for a realist ontology of mental disease. J. Biomed. Semant. Werner Ceusters, Barry Smith
2010	J	`jnl`	Ontological realism: A methodology for coordinated evolution of scientific ontologies. Appl. Ontology Barry Smith, Werner Ceusters
2010	J	`jnl`	Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base. BMC Bioinform. Jiye Ai, Barry Smith, Wong T. David
2009	J	`jnl`	A spatio-temporal ontology for geographic information integration. Int. J. Geogr. Inf. Sci. Thomas Bittner, Maureen Donnelly, Barry Smith
2009	—	`conf`	An Evolutionary Approach to the Representation of Adverse Events. MIE Werner Ceusters, Maria Capolupo, Barry Smith, Georges De Moor
2009	J	`jnl`	An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinform. Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell
2009	J	`jnl`	Survey-based naming conventions for use in OBO Foundry ontology development. BMC Bioinform. Daniel Schober, Barry Smith, Suzanna E. Lewis, Waclaw Kusnierczyk, Jane Lomax, Chris Mungall, Chris F. Taylor, Philippe Rocca-Serra, Susanna-Assunta Sansone
2009	J	`jnl`	TGF-beta signaling proteins and the Protein Ontology. BMC Bioinform. Cecilia N. Arighi, Hongfang Liu, Darren A. Natale, Winona C. Barker, Harold J. Drabkin, Judith A. Blake, Barry Smith, Cathy H. Wu
2009	—	`conf`	The Role of Ontologies for Sustainable, Semantically Interoperable and Trustworthy EHR Solutions. MIE Bernd Blobel, Dipak Kalra, Marc Koehn, Ken Lunn, Peter Pharow, Pekka Ruotsalainen, Stefan Schulz, Barry Smith
2008	J	`jnl`	Adapting Clinical Ontologies in Real-World Environments. J. Univers. Comput. Sci. Holger Stenzhorn, Stefan Schulz, Martin Boeker, Barry Smith
2008	—	`conf`	Applications of the ACGT Master Ontology on Cancer. OTM Workshops Mathias Brochhausen, Gabriele Weiler, Luis Martín, Cristian Cocos, Holger Stenzhorn, Norbert M. Graf, Martin Doerr, Manolis Tsiknakis, Barry Smith
2008	—	`ch.`	CARO - The Common Anatomy Reference Ontology. Anatomy Ontologies for Bioinformatics Melissa A. Haendel, Fabian Neuhaus, David Osumi-Sutherland, Paula M. Mabee, José L. V. Mejino Jr., Chris Mungall, Barry Smith
2008	J	`jnl`	Gene Ontology annotations: what they mean and where they come from. BMC Bioinform. David P. Hill, Barry Smith, Monica S. McAndrews-Hill, Judith A. Blake
2008	—	`ch.`	Modelling Principles and Methodologies - Relations in Anatomical Ontologies. Anatomy Ontologies for Bioinformatics Fabian Neuhaus, Barry Smith
2008	C	`conf`	Ontology (Science). FOIS Barry Smith
2007	—	`conf`	07132 Report - Towards Interoperability of Biomedical Ontologies. Towards Interoperability of Biomedical Ontologies Mark A. Musen, Michael Schroeder, Barry Smith
2007	—	`conf`	A Multi-INT Semantic Reasoning Framework for Intelligence Analysis Support. OIC Terry L. Janssen, Herbert Basik, Mike Dean, Barry Smith
2007	J	`jnl`	Framework for a Protein Ontology. BMC Bioinform. Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu
2007	Misc	`conf`	Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. AMIA Lee T. Sam, Tara Borlawsky, Ying Tao, Jianrong Li, Carol Friedman, Barry Smith, Yves A. Lussier
2007	J	`jnl`	Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artif. Intell. Medicine Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun
2007	J	`jnl`	Negative findings in electronic health records and biomedical ontologies: A realist approach. Int. J. Medical Informatics Werner Ceusters, Peter L. Elkin, Barry Smith
2007	—	`conf`	Referent Tracking and its Applications. I3 Werner Ceusters, Barry Smith
2007	J	`jnl`	Referent tracking for Digital Rights Management. Int. J. Metadata Semant. Ontologies Werner Ceusters, Barry Smith
2007	—	`ed.`	Towards Interoperability of Biomedical Ontologies, 27.03. - 30.03.2007 Towards Interoperability of Biomedical Ontologies Mark A. Musen, Michael Schroeder, Barry Smith
2007	Misc	`conf`	What Particulars are Referred to in Electronic Health Record Data? A Case Study in Integrating Referent Tracking into an EHR Application. AMIA Ron Rudnicki, Werner Ceusters, Shahid Manzoor, Barry Smith
2007	Misc	`conf`	Would SNOMED CT benefit from Realism-Based Ontology Evolution? AMIA Werner Ceusters, Kent A. Spackman, Barry Smith
2006	Misc	`conf`	A Realism-Based Approach to the Evolution of Biomedical Ontologies. AMIA Werner Ceusters, Barry Smith
2006	C	`conf`	Against Idiosyncrasy in Ontology Development. FOIS Barry Smith
2006	J	`jnl`	Bridging the gap between medical and bioinformatics: An ontological case study in colon carcinoma. Comput. Biol. Medicine Anand Kumar, Yum Lina Yip, Barry Smith, Pierre Grenon
2006	J	`jnl`	Formal ontology for natural language processing and the integration of biomedical databases. Int. J. Medical Informatics Jonathan Simon, Mariana Casella dos Santos, James Matthew Fielding, Barry Smith
2006	J	`jnl`	From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies. J. Biomed. Informatics Barry Smith
2006	—	`conf`	HL7 RIM: An Incoherent Standard. MIE Barry Smith, Werner Ceusters
2006	J	`jnl`	Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference. J. Biomed. Informatics James J. Cimino, Barry Smith
2006	J	`jnl`	Quality control for terms and definitions in ontologies and taxonomies. BMC Bioinform. Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa, Barry Smith
2006	—	`conf`	Referent Tracking: The Problem of Negative Findings. MIE Werner Ceusters, Peter L. Elkin, Barry Smith
2006	J	`jnl`	Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. J. Web Semant. Werner Ceusters, Barry Smith
2006	J	`jnl`	Strategies for referent tracking in electronic health records. J. Biomed. Informatics Werner Ceusters, Barry Smith
2006	J	`jnl`	The 2006 Upper Ontology Summit Joint Communiqué. Appl. Ontology Leo Obrst, Patrick Cassidy, Steve Ray, Barry Smith, Dagobert Soergel, Matthew West, Peter Yim
2006	—	`conf`	Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain. KR-MED Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters
2006	J	`jnl`	Towards new information resources for public health - From WordNet to MedicalWordNet. J. Biomed. Informatics Christiane Fellbaum, Udo Hahn, Barry Smith
2005	Misc	`conf`	A Strategy for Improving and Integrating Biomedical Ontologies. AMIA Cornelius Rosse, Anand Kumar, José L. V. Mejino Jr., Daniel L. Cook, Landon T. Detwiler, Barry Smith
2005	—	`conf`	An Ontology for Carcinoma Classification for Clinical Bioinformatics. MIE Anand Kumar, Yum Lina Yip, Barry Smith, Dirk Marwede, Daniel Novotný
2005	Misc	`conf`	An Ontology-Based Methodology for the Migration of Biomedical Terminologies to Electronic Health Records. AMIA Barry Smith, Werner Ceusters
2005	—	`conf`	Anatomical Information Science. COSIT Barry Smith, José L. V. Mejino Jr., Stefan Schulz, Anand Kumar, Cornelius Rosse
2005	Misc	`conf`	How to Distinguish Parthood from Location in Bio-Ontologies. AMIA Stefan Schulz, Philipp Daumke, Barry Smith, Udo Hahn
2005	B	`conf`	Oncology Ontology in the NCI Thesaurus. AIME Anand Kumar, Barry Smith
2005	—	`conf`	The Significance of SNODENT. MIE Louis J. Goldberg, Werner Ceusters, John Eisner, Barry Smith
2005	—	`conf`	Tracking Referents in Electronic Health Records. MIE Werner Ceusters, Barry Smith
2005	—	`conf`	Wüsteria. MIE Barry Smith, Werner Ceusters, Rita Temmerman
2004	J	`jnl`	Endurants and perdurants in directly depicting ontologies. AI Commun. Thomas Bittner, Maureen Donnelly, Barry Smith
2004	—	`conf`	Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . KR-MED Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun
2004	—	`conf`	LinkSuite™: Formally Robust Ontology-Based Data and Information Integration. DILS Werner Ceusters, Barry Smith, James Matthew Fielding
2004	B	`conf`	Medical WordNet: A New Methodology for the Construction and Validation of Information Resources for Consumer Health. COLING Barry Smith, Christiane Fellbaum
2004	—	`conf`	On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology. DILS Barry Smith, Jacob Köhler, Anand Kumar
2004	A*	`conf`	Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration. KR James Matthew Fielding, Jonathan Simon, Werner Ceusters, Barry Smith
2004	—	`conf`	Ontology-Based Error Detection in SNOMED-CT®. MedInfo Werner Ceusters, Barry Smith, Anand Kumar, Christoffel Dhaen
2004	J	`jnl`	Ontology-assisted database integration to support natural language processing and biomedical data-mining. J. Integr. Bioinform. Jean-Luc Verschelde, Mariana Casella dos Santos, Tom Deray, Barry Smith, Werner Ceusters
2004	—	`ed.`	Proceedings of the KI2003 Workshop on Reference Ontologies and Application Ontologies, Hamburg, Germany, September 16, 2003 KI Workshop on Reference Ontologies and Application Ontologies Pierre Grenon, Christopher Menzel, Barry Smith
2004	J	`jnl`	SNAP and SPAN: Towards Dynamic Spatial Ontology. Spatial Cogn. Comput. Pierre Grenon, Barry Smith
2004	—	`conf`	The Role of Foundational Relations in the Alignment of Biomedical Ontologies. MedInfo Barry Smith, Cornelius Rosse
2004	C	`conf`	Towards a Proteomics Meta-Classification. BIBE Anand Kumar, Barry Smith
2004	—	`conf`	Using Philosophy to Improve the Coherence and Interoperability of Applications Ontologies: A Field Report on the Collaboration of IFOMIS and L&C. WSPI Jonathan Simon, James Matthew Fielding, Barry Smith
2003	—	`ch.`	A Theory of Granular Partitions. Foundations of Geographic Information Science Thomas Bittner, Barry Smith
2003	B	`conf`	Bodily Systems and the Modular Structure of the Human Body. AIME Barry Smith, Igor Papakin, Katherine Munn
2003	—	`conf`	Layers: A New Approach to Locating Objects in Space. COSIT Maureen Donnelly, Barry Smith
2003	B	`conf`	Ontology for Task-Based Clinical Guidelines and the Theory of Granular Partitions. AIME Anand Kumar, Barry Smith
2003	Misc	`conf`	The Ontology of the Gene Ontology. AMIA Barry Smith, Jennifer Williams, Steffen Schulze-Kremer
2003	Misc	`conf`	The Universal Medical Language System and the Gene Ontology: Some Critical Reflections. KI Anand Kumar, Barry Smith
2003	—	`conf`	Using Cross-Lingual Information to Cope with Underspecification in Formal Ontologies. MIE Werner Ceusters, Ignace Desimpel, Barry Smith, Stefan Schulz
2003	J	`jnl`	Vague Reference and Approximating Judgments. Spatial Cogn. Comput. Thomas Bittner, Barry Smith
2002	J	`jnl`	Quantum Mereotopology. Ann. Math. Artif. Intell. Barry Smith, Berit Brogaard
2002	J	`jnl`	Surrounding space the ontology of organism-environment relations. Theory Biosci. Barry Smith, Achille C. Varzi
2001	—	`conf`	A Taxonomy of Granular Partitions. COSIT Thomas Bittner, Barry Smith
2001	C	`conf`	FOIS introduction: Ontology - towards a new synthesis. FOIS Barry Smith, Christopher A. Welty
2001	—	`conf`	Features, Objects, and Other Things: Ontological Distinctions in the Geographic Domain. COSIT David M. Mark, André Skupin, Barry Smith
2001	C	`conf`	GOL: toward an axiomatized upper-level ontology. FOIS Wolfgang Degen, Barbara Heller, Heinrich Herre, Barry Smith
2001	J	`jnl`	Geographical categories: an ontological investigation. Int. J. Geogr. Inf. Sci. Barry Smith, David M. Mark
2001	C	`conf`	Granular partitions and vagueness. FOIS Thomas Bittner, Barry Smith
2001	—	`conf`	True Grid. COSIT Barry Smith
1999	—	`conf`	Agglomerations. COSIT Barry Smith
1999	—	`conf`	Ontology and Geographic Objects: An Empirical Study of Cognitive Categorization. COSIT David M. Mark, Barry Smith, Barbara Tversky
1999	—	`conf`	The Formal Structure of Ecological Contexts. CONTEXT Barry Smith, Achille C. Varzi
1997	—	`conf`	Fiat and Bona Fide Boundaries: Towards on Ontology of Spatially Extended Objects. COSIT Barry Smith, Achille C. Varzi
1996	J	`jnl`	Mereotopology: A Theory of Parts and Boundaries. Data Knowl. Eng. Barry Smith
1995	J	`jnl`	Formal ontology, common sense and cognitive science. Int. J. Hum. Comput. Stud. Barry Smith
1995	—	`conf`	On Drawing Lines on a Map. COSIT Barry Smith
1994	J	`jnl`	Book reviews. Minds Mach. Robert E. Filman, Donald Nute, Merrie Bergmann, Thomas Tymoczko, Barry Smith, Gerard Ellis, Ronald N. Giere