Barry Honig

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2019 J jnl
Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer.
IEEE ACM Trans. Comput. Biol. Bioinform.
Lin Yuan, Lehang Guo, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2018 J jnl
Mutli-Features Prediction of Protein Translational Modification Sites.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2017 J jnl
miRNA-Disease Association Prediction with Collaborative Matrix Factorization.
Complex.
Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
2015 J jnl
Predicting Peptide-Mediated Interactions on a Genome-Wide Scale.
PLoS Comput. Biol.
T. Scott Chen, Donald Petrey, José Ignacio Garzón, Barry Honig
2014 J jnl
OnTheFly: a database of
Nucleic Acids Res.
Shula Shazman, Hunjoong Lee, Yakov Socol, Richard S. Mann, Barry Honig
2013 J jnl
PrePPI: a structure-informed database of protein-protein interactions.
Nucleic Acids Res.
Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig
2012 J jnl
Using systems and structure biology tools to dissect cellular phenotypes.
J. Am. Medical Informatics Assoc.
Aris Floratos, Barry Honig, Dana Pe'er, Andrea Califano
2011 J jnl
MarkUs: a server to navigate sequence-structure-function space.
Nucleic Acids Res.
Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey
2011 J jnl
PredUs: a web server for predicting protein interfaces using structural neighbors.
Nucleic Acids Res.
Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey
2011 J jnl
Using Structure to Explore the Sequence Alignment Space of Remote Homologs.
PLoS Comput. Biol.
Andrew Kuziemko, Barry Honig, Donald Petrey
2010 J jnl
PUDGE: a flexible, interactive server for protein structure prediction.
Nucleic Acids Res.
Raquel Norel, Donald Petrey, Barry Honig
2010 J jnl
VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity.
PLoS Comput. Biol.
Brian Y. Chen, Barry Honig
2006 J jnl
VISTAL - a new 2D visualization tool of protein 3D structural alignments.
Bioinform.
Rachel Kolodny, Barry Honig
2003 J jnl
Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors.
Nucleic Acids Res.
Alona Sosinsky, Christopher P. Bonin, Richard S. Mann, Barry Honig
2002 J jnl
Bioinformatics in structural genomics - Editorial.
Bioinform.
Burkhard Rost, Barry Honig, Alfonso Valencia
2002 J jnl
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects.
J. Comput. Chem.
Walter Rocchia, Sundaram Sridharan, Anthony Nicholls, Emil Alexov, Alessandro Chiabrera, Barry Honig
1995 J jnl
A Fast Multipole Boundary Element Method for Molecular Electrostatics: An Optimal Approach for Large Systems.
J. Comput. Chem.
Ranganathan Bharadwaj, Andreas Windemuth, S. Sriharan, Barry Honig, Antony Nocholls
1991 J jnl
The inclusion of electrostatic hydration energies in molecular mechanics calculations.
J. Comput. Aided Mol. Des.
Michael K. Gilson, Barry Honig