Baris E. Suzek

19 papers A 1Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2018 — conf
ProSetComp: A Platform for Protein Set Comparisons.
BCB
Erdem Turk, Turkan Arit, Delikanli Mertcan Susus, Ilayda Ucar, Baris E. Suzek
2015 J jnl
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.
Bioinform.
Baris E. Suzek, Yuqi Wang, Hongzhan Huang, Peter B. McGarvey, Cathy H. Wu
2013 J jnl
A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers.
J. Digit. Imaging
Andrew J. Buckler, David Paik, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Baris E. Suzek
2013 J jnl
A fast Peptide Match service for UniProt Knowledgebase.
Bioinform.
Chuming Chen, Zhiwen Li, Hongzhan Huang, Baris E. Suzek, Cathy H. Wu
2013 J jnl
Erratum to: Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers.
J. Digit. Imaging
Andrew J. Buckler, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik
2013 — conf
In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases.
BCB
Peter B. McGarvey, Baris E. Suzek, Shruti Rao, Subha Madhavan, James N. Baraniuk, Samir Lababidi, Andrea Sutherland, Richard Forshee
2013 J jnl
Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers.
J. Digit. Imaging
Andrew J. Buckler, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik
2012 J jnl
Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries.
J. Am. Medical Informatics Assoc.
Peter B. McGarvey, Sweta Ladwa, Mauricio Oberti, Anca Dana Dragomir, Erin K. Hedlund, David M. Tanenbaum, Baris E. Suzek, Subha Madhavan
2012 J jnl
Life sciences domain analysis model.
J. Am. Medical Informatics Assoc.
Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew J. Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm
2011 J jnl
A comprehensive protein-centric ID mapping service for molecular data integration.
Bioinform.
Hongzhan Huang, Peter B. McGarvey, Baris E. Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H. Wu
2009 J jnl
Infrastructure for the life sciences: design and implementation of the UniProt website.
BMC Bioinform.
Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger
2008 A conf
Orchestrating caGrid Services in Taverna.
ICWS
Wei Tan, Ravi K. Madduri, Kiran Keshav, Baris E. Suzek, Scott Oster, Ian T. Foster
2007 J jnl
UniRef: comprehensive and non-redundant UniProt reference clusters.
Bioinform.
Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu
2006 J jnl
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res.
Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
2004 J jnl
PIRSF: family classification system at the Protein Information Resource.
Nucleic Acids Res.
Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker
2004 J jnl
The PIR integrated protein databases and data retrieval system.
Data Sci. J.
Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu
2003 J jnl
The Protein Information Resource.
Nucleic Acids Res.
Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker
2002 J jnl
The Protein Information Resource: an integrated public resource of functional annotation of proteins.
Nucleic Acids Res.
Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker
2001 J jnl
A probabilistic method for identifying start codons in bacterial genomes.
Bioinform.
Baris E. Suzek, Maria D. Ermolaeva, Mark J. Schreiber, Steven Salzberg