Barbora Kozlíková

86 papers A* 1B 4Misc 2Journal 58Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Embarrassingly Agile - Data Visualization Methodology in Emergency Responses. IEEE Computer Graphics and Applications Barbora Kozlíková, Daniel Archambault, Johannes Dreesman, Andreas Kerren, Biagio Lucini, Cagatay Turkay
2025	J	`jnl`	Helveg: Diagrams for Software Documentation. CoRR Adam J. Stepánek, David Kuták, Barbora Kozlíková, Jan Byska
2025	J	`jnl`	Helveg: Diagrams for Software Documentation. IEEE Trans. Vis. Comput. Graph. Adam J. Stepánek, David Kuták, Barbora Kozlíková, Jan Byska
2025	J	`jnl`	Immersive and Interactive Learning With eDIVE: A Solution for Creating Collaborative VR Education Experiences. Comput. Graph. Forum Vojtech Bruza, Alzbeta Sasinková, Cenek Sasinka, Zdenek Stachon, Barbora Kozlíková, Jirí Chmelík
2025	J	`jnl`	Tasks and Visual Abstractions for 3D Chromatin Representation. Comput. Graph. Forum Adam Rychlý, Jan Byska, Barbora Kozlíková, Katarína Furmanová
2025	J	`jnl`	The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. IEEE Trans. Vis. Comput. Graph. Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Barbora Kozlíková, Laura A. Garrison
2025	J	`jnl`	Visual Support for the Loop Grafting Workflow on Proteins. IEEE Trans. Vis. Comput. Graph. Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková
2025	J	`jnl`	VizCV: AI-assisted visualization of researchers' publications tracks. CoRR Vladimír Lazárik, Marco Agus, Barbora Kozlíková, Pere-Pau Vázquez
2025	J	`jnl`	Who Let the Guards Out: Visual Support for Patrolling Games. IEEE Trans. Vis. Comput. Graph. Matej Lang, Adam J. Stepánek, Róbert Zvara, Vojtech Rehák, Barbora Kozlíková
2024	J	`jnl`	Antarstick: Extracting Snow Height From Time-Lapse Photography. Comput. Graph. Forum Matej Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byska, Barbora Kozlíková
2024	J	`jnl`	Design and evaluation of alphabetic and numeric input methods for virtual reality. Comput. Graph. David Kuták, Danielle Langlois, Roman Rozic, Jan Byska, Haichao Miao, Simone Kriglstein, Barbora Kozlíková
2024	J	`jnl`	InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Trans. Vis. Comput. Graph. Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone
2024	B	`conf`	Interactive Diagrams for Software Documentation. VISSOFT Adam Stspánek, David Kuták, Barbora Kozlíková, Jan Byska
2024	J	`jnl`	Interactive Diagrams for Software Documentation. CoRR Adam J. Stepánek, David Kuták, Barbora Kozlíková, Jan Byska
2024	J	`jnl`	The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. CoRR Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Barbora Kozlíková, Laura A. Garrison
2024	J	`jnl`	Virtual reality inspection of chromatin 3D and 2D data. Comput. Graph. Elena Molina, David Kouril, Tobias Isenberg, Barbora Kozlíková, Pere-Pau Vázquez
2024	J	`jnl`	Visual Support for the Loop Grafting Workflow on Proteins. CoRR Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková
2024	J	`jnl`	Who Let the Guards Out: Visual Support for Patrolling Games. CoRR Matej Lang, Adam J. Stepánek, Róbert Zvara, Vojtech Rehák, Barbora Kozlíková
2023	J	`jnl`	A multimodal smartwatch-based interaction concept for immersive environments. Comput. Graph. Matej Lang, Clemens Strobel, Felix Weckesser, Danielle Langlois, Enkelejda Kasneci, Barbora Kozlíková, Michael Krone
2023	J	`jnl`	State of the Art of Molecular Visualization in Immersive Virtual Environments. Comput. Graph. Forum David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao
2023	J	`jnl`	Visualization of Biomedical Data - Shaping the Future and Building Bridges (Dagstuhl Seminar 23451). Dagstuhl Reports Katja Bühler, Barbora Kozlíková, Michael Krone, Cagatay Turkay, Ramasamy Pathmanaban
2023	J	`jnl`	sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Trans. Vis. Comput. Graph. Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
2023	J	`jnl`	xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, Rudolf Nenutil, Jan Byska, Vít Rusnák
2022	J	`jnl`	ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework. CoRR Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril
2022	J	`jnl`	LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar
2022	J	`jnl`	Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Trans. Vis. Comput. Graph. David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao
2022	J	`jnl`	sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. CoRR Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
2021	J	`jnl`	ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Trans. Vis. Comput. Graph. María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
2021	J	`jnl`	Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020. Comput. Graph. Barbora Kozlíková, Michael Krone, Kay Nieselt, Renata G. Raidou, Noeska N. Smit
2021	J	`jnl`	HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Trans. Vis. Comput. Graph. David Kouril, Tobias Isenberg, Barbora Kozlíková, Miriah Meyer, M. Eduard Gröller, Ivan Viola
2021	A*	`conf`	Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures. ICLR Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski
2021	J	`jnl`	VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality. Comput. Graph. Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková
2021	J	`jnl`	Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Trans. Vis. Comput. Graph. Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková
2020	—	`ed.`	10th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2020, Tübingen, Germany, September 28 - October 1, 2020 VCBM Barbora Kozlíková, Michael Krone, Noeska N. Smit, Kay Nieselt, Renata Georgia Raidou
2020	—	`ch.`	Case Studies for Working with Domain Experts. Foundations of Data Visualization Johanna Beyer, Charles D. Hansen, Mario Hlawitschka, Ingrid Hotz, Barbora Kozlíková, Gerik Scheuermann, Markus Stommel, Marc Streit, Johannes Waschke, Thomas Wischgoll, Yong Wan
2020	J	`jnl`	ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. CoRR María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
2020	J	`jnl`	DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska
2020	J	`jnl`	Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019. Comput. Graph. Barbora Kozlíková, Bernhard Preim, Katja Bühler, Renata G. Raidou
2020	J	`jnl`	Formalizing Biological and Medical Visualization (NII Shonan Meeting 167). NII Shonan Meet. Rep. Renata Georgia Raidou, Barbora Kozlíková, Johanna Beyer, Timo Ropinski, Issei Fujishiro
2020	J	`jnl`	Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Trans. Vis. Comput. Graph. Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
2020	B	`conf`	PINGU Principles of Interactive Navigation for Geospatial Understanding. PacificVis Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková
2020	J	`jnl`	ProteiNN: Intrinsic-Extrinsic Convolution and Pooling for Scalable Deep Protein Analysis. CoRR Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski
2020	J	`jnl`	Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning. J. Intell. Robotic Syst. Vojtech Vonásek, Robert Penicka, Barbora Kozlíková
2020	J	`jnl`	The moving target of visualization software for an increasingly complex world. Comput. Graph. Guido Reina, Hank Childs, Kresimir Matkovic, Katja Bühler, Manuela Waldner, David Pugmire, Barbora Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, M. Eduard Gröller, Michael Krone
2020	J	`jnl`	Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. CoRR Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková
2020	—	`ch.`	Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. Protein-Protein Interaction Networks Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek
2019	J	`jnl`	Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Comput. Graph. Forum Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner
2019	—	`conf`	Computing multiple guiding paths for sampling-based motion planning. ICAR Vojtech Vonásek, Robert Penicka, Barbora Kozlíková
2019	—	`conf`	DockVis: Visual Analysis of Molecular Docking Data. VCBM Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska
2019	—	`ed.`	Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2019, Brno, Czech Republic, September 4-6, 2019 VCBM Barbora Kozlíková, Renata Georgia Raidou
2019	—	`conf`	LOOPS: Visual Analysis Tool for Non-Periodic Protein Structures. EuroVis (Posters) Pavol Ulbrich, Michal Hornák, Barbora Kozlíková
2019	J	`jnl`	Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Trans. Vis. Comput. Graph. David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
2019	J	`jnl`	Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. CoRR Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
2019	J	`jnl`	Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. J. Intell. Robotic Syst. Vojtech Vonásek, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková
2019	B	`conf`	Visual Analysis of Ligand Trajectories in Molecular Dynamics. PacificVis Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková
2019	J	`jnl`	Visualization of Large Molecular Trajectories. IEEE Trans. Vis. Comput. Graph. David Duran, Pedro Hermosilla, Timo Ropinski, Barbora Kozlíková, Àlvar Vinacua, Pere-Pau Vázquez
2018	—	`ed.`	8th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM@MICCAI 2018, Granada, Spain, September 20-21, 2018 VCBM@MICCAI Anna Puig, Thomas Schultz, Anna Vilanova, Ingrid Hotz, Barbora Kozlíková, Pere-Pau Vázquez
2018	J	`jnl`	CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková
2018	J	`jnl`	COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinform. Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková
2018	J	`jnl`	Instant Construction and Visualization of Crowded Biological Environments. IEEE Trans. Vis. Comput. Graph. Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
2017	—	`ed.`	19th Eurographics Conference on Visualization, EuroVis 2017 - Short Papers, Barcelona, Spain, June 12-16, 2017 EuroVis (Short Papers) Barbora Kozlíková, Tobias Schreck, Thomas Wischgoll
2017	—	`conf`	AnthroVis: visual analysis of 3D mesh ensembles for forensic anthropology. SCCG Katarína Furmanová, Petra Urbanová, Barbora Kozlíková
2017	J	`jnl`	Comparative visualization of protein secondary structures. BMC Bioinform. Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
2017	J	`jnl`	Generating various composite human faces from real 3D facial images. Vis. Comput. Igor Chalas, Petra Urbanova, Vojtech Jurík, Zuzana Ferkova, Marie Jandová, Jirí Sochor, Barbora Kozlíková
2017	J	`jnl`	Interactive exploration of ligand transportation through protein tunnels. BMC Bioinform. Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková
2017	—	`conf`	Protein Tunnel Reprojection for Physico-Chemical Property Analysis. VCBM Jan Malzahn, Barbora Kozlíková, Timo Ropinski
2017	—	`conf`	Tunnel detection in protein structures using sampling-based motion planning. RoMoCo Vojtech Vonásek, Barbora Kozlíková
2017	J	`jnl`	Visualization of Biomolecular Structures: State of the Art Revisited. Comput. Graph. Forum Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
2017	—	`conf`	Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. VCBM Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková
2016	B	`conf`	Accelerated visualization of transparent molecular surfaces in molecular dynamics. PacificVis Adam Jurcík, Július Parulek, Jirí Sochor, Barbora Kozlíková
2016	J	`jnl`	AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Trans. Vis. Comput. Graph. Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
2016	Misc	`conf`	Application of sampling-based path planning for tunnel detection in dynamic protein structures. MMAR Vojtech Vonásek, Barbora Kozlíková
2016	J	`jnl`	CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE ACM Trans. Comput. Biol. Bioinform. Antonín Pavelka, Eva Sebestova, Barbora Kozlíková, Jan Brezovsky, Jirí Sochor, Jirí Damborský
2016	—	`conf`	Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. VCBM/MedViz Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
2016	J	`jnl`	Visual Analysis of Biomolecular Cavities: State of the Art. Comput. Graph. Forum Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola
2015	—	`conf`	Generation of Variable Human Faces from 3D Scan Dataset. VS-GAMES Igor Chalas, Zuzana Ferkova, Katarína Furmanová, Jiri Sochor, Barbora Kozlíková
2015	J	`jnl`	MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Comput. Graph. Forum Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
2015	—	`conf`	Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. SCCG Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor
2015	—	`conf`	Visibility-based approach to surface detection of tunnels in proteins. SCCG Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková
2015	—	`conf`	Visualization of Biomolecular Structures: State of the Art. EuroVis (STARs) Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
2014	J	`jnl`	CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinform. Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor
2014	Misc	`conf`	Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. PACBB Ondrej Strnad, Barbora Kozlíková, Jiri Sochor
2014	—	`conf`	Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. VCBM Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor
2012	J	`jnl`	CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Comput. Biol. Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský
2010	—	`conf`	CAVER Viewer - the explorer of behaviour of tunnels in proteins. Eurographics (Posters) Barbora Kozlíková, Jirí Sochor
2007	—	`conf`	Visualization of tunnels in protein molecules. Afrigraph Barbora Kozlíková, Filip Andres, Jiri Sochor