Baozhen Shan

16 papers A 1B 1C 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Proteoform search from protein database with top-down mass spectra.
Nat. Comput. Sci.
Kunyi Li, Baozhen Shan, Lei Xin, Ming Li, Lusheng Wang
2022 — conf
De novo sequencing of multiple SILAC-based tandem mass spectra.
ICCI*CC
Fang Han, Baozhen Shan, Kaizhong Zhang
2021 J jnl
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li
2021 J jnl
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices.
Nat. Mach. Intell.
Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi
2020 J jnl
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines.
Nat. Mach. Intell.
Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li
2020 J jnl
PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation.
CoRR
Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan, Ming Li
2019 J jnl
DeepNovoV2: Better de novo peptide sequencing with deep learning.
CoRR
Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi
2018 J jnl
DeepIso: A Deep Learning Model for Peptide Feature Detection.
CoRR
Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017 J jnl
DISC: DISulfide linkage Characterization from tandem mass spectra.
Bioinform.
Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang
2017 J jnl
De novo peptide sequencing by deep learning.
Proc. Natl. Acad. Sci. USA
Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017 J jnl
Protein identification with deep learning: from abc to xyz.
CoRR
Ngoc Hieu Tran, Zachariah Levine, Lei Xin, Baozhen Shan, Ming Li
2010 J jnl
Better score function for peptide identification with ETD MS/MS spectra.
BMC Bioinform.
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma
2008 J jnl
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry.
J. Bioinform. Comput. Biol.
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
2007 B conf
Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry.
APBC
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
2004 C conf
Stochastic Context-Free Graph Grammars for Glycoprotein Modelling.
CIAA
Baozhen Shan
2003 A conf
Fast Algorithms for Extended Regular Expression Matching and Searching.
STACS
Lucian Ilie, Baozhen Shan, Sheng Yu