Baozhen Shan - RankMe

16 papers A 1B 1C 1Journal 12Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Proteoform search from protein database with top-down mass spectra. Nat. Comput. Sci. Kunyi Li, Baozhen Shan, Lei Xin, Ming Li, Lusheng Wang
2022	—	`conf`	De novo sequencing of multiple SILAC-based tandem mass spectra. ICCI*CC Fang Han, Baozhen Shan, Kaizhong Zhang
2021	J	`jnl`	ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition. IEEE ACM Trans. Comput. Biol. Bioinform. Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li
2021	J	`jnl`	Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. Nat. Mach. Intell. Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi
2020	J	`jnl`	Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nat. Mach. Intell. Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li
2020	J	`jnl`	PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation. CoRR Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan, Ming Li
2019	J	`jnl`	DeepNovoV2: Better de novo peptide sequencing with deep learning. CoRR Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi
2018	J	`jnl`	DeepIso: A Deep Learning Model for Peptide Feature Detection. CoRR Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017	J	`jnl`	DISC: DISulfide linkage Characterization from tandem mass spectra. Bioinform. Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang
2017	J	`jnl`	De novo peptide sequencing by deep learning. Proc. Natl. Acad. Sci. USA Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017	J	`jnl`	Protein identification with deep learning: from abc to xyz. CoRR Ngoc Hieu Tran, Zachariah Levine, Lei Xin, Baozhen Shan, Ming Li
2010	J	`jnl`	Better score function for peptide identification with ETD MS/MS spectra. BMC Bioinform. Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma
2008	J	`jnl`	Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
2007	B	`conf`	Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
2004	C	`conf`	Stochastic Context-Free Graph Grammars for Glycoprotein Modelling. CIAA Baozhen Shan
2003	A	`conf`	Fast Algorithms for Extended Regular Expression Matching and Searching. STACS Lucian Ilie, Baozhen Shan, Sheng Yu