Balachandran Manavalan

50 papers B 1Journal 46Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Decision making based ensemble feature selection approach through a new score function in q-rung orthopair hesitant fuzzy environment. Math. Comput. Simul. Kavitha S., Kendra N., Satheeshkumar J., T. Amudha, Balachandran Manavalan
2025	B	`conf`	Federated Semi-Supervised FixMatch: Enhancing CutMix for Medical Image Segmentation. IEEE Big Data Thu Thuy Le, Nhut Minh Nguyen, Nhat Truong Pham, Phuong-Nam Tran, Nguyen Doan Hieu Nguyen, Phuong Luu Vo, Balachandran Manavalan, Duc Ngoc Minh Dang
2025	J	`jnl`	Leveraging deep transfer learning and explainable AI for accurate COVID-19 diagnosis: Insights from a multi-national chest CT scan study. Comput. Biol. Medicine Nhat Truong Pham, Jinsol Ko, Masaud Shah, Rajan Rakkiyappan, Hyun Goo Woo, Balachandran Manavalan
2025	J	`jnl`	M3S-ALG: Improved and robust prediction of allergenicity of chemical compounds by using a novel multi-step stacking strategy. Future Gener. Comput. Syst. Phasit Charoenkwan, Nalini Schaduangrat, Le Thi Phan, Balachandran Manavalan, Watshara Shoombuatong
2025	J	`jnl`	Molecular pretraining models towards molecular property prediction. Sci. China Inf. Sci. Jianbo Qiao, Wenjia Gao, Junru Jin, Ding Wang, Xu Guo, Balachandran Manavalan, Leyi Wei
2025	J	`jnl`	REMED-T2D: A robust ensemble learning model for early detection of type 2 diabetes using healthcare dataset. Comput. Biol. Medicine Le Thi Phan, Rajan Rakkiyappan, Balachandran Manavalan
2025	J	`jnl`	TP-ML: A Machine-Learning-Based Tool to Identify Threonine Proteases Using Sequence-Derived Optimal Features. IEEE Trans. Comput. Biol. Bioinform. Ahmad Firoz, Adeel Malik, Nitin Mahajan, Le Thi Phan, Hani S. H. Mohammed Ali, Chang-Bae Kim, Balachandran Manavalan
2025	J	`jnl`	XMolCap: Advancing Molecular Captioning Through Multimodal Fusion and Explainable Graph Neural Networks. IEEE J. Biomed. Health Informatics Duong Thanh Tran, Nguyen Doan Hieu Nguyen, Nhat Truong Pham, Rajan Rakkiyappan, Rajendra Karki, Balachandran Manavalan
2025	J	`jnl`	xBitterT5: an explainable transformer-based framework with multimodal inputs for identifying bitter-taste peptides. J. Cheminformatics Nguyen Doan Hieu Nguyen, Nhat Truong Pham, Duong Thanh Tran, Leyi Wei, Adeel Malik, Balachandran Manavalan
2024	J	`jnl`	Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach. Briefings Bioinform. Nhat Truong Pham, Le Thi Phan, Jimin Seo, Yeonwoo Kim, Minkyung Song, Sukchan Lee, Young-Jun Jeon, Balachandran Manavalan
2024	J	`jnl`	CODENET: A deep learning model for COVID-19 detection. Comput. Biol. Medicine Hong Ju, Yanyan Cui, Qiaosen Su, Liran Juan, Balachandran Manavalan
2024	J	`jnl`	H2Opred: a robust and efficient hybrid deep learning model for predicting 2'-O-methylation sites in human RNA. Briefings Bioinform. Nhat Truong Pham, Rajan Rakkiyapan, Jongsun Park, Adeel Malik, Balachandran Manavalan
2024	J	`jnl`	HOTGpred: Enhancing human O-linked threonine glycosylation prediction using integrated pretrained protein language model-based features and multi-stage feature selection approach. Comput. Biol. Medicine Nhat Truong Pham, Ying Zhang, Rajan Rakkiyappan, Balachandran Manavalan
2024	J	`jnl`	Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach. Comput. Biol. Medicine Md. Harun-Or-Roshid, Kazuhiro Maeda, Le Thi Phan, Balachandran Manavalan, Hiroyuki Kurata
2024	J	`jnl`	Unveiling local and global conformational changes and allosteric communications in SOD1 systems using molecular dynamics simulation and network analyses. Comput. Biol. Medicine Shaherin Basith, Balachandran Manavalan, Gwang Lee
2024	J	`jnl`	mHPpred: Accurate identification of peptide hormones using multi-view feature learning. Comput. Biol. Medicine Shaherin Basith, Vinoth Kumar Sangaraju, Balachandran Manavalan, Gwang Lee
2023	J	`jnl`	ADP-Fuse: A novel two-layer machine learning predictor to identify antidiabetic peptides and diabetes types using multiview information. Comput. Biol. Medicine Shaherin Basith, Nhat Truong Pham, Minkyung Song, Gwang Lee, Balachandran Manavalan
2023	J	`jnl`	Computational prediction of protein folding rate using structural parameters and network centrality measures. Comput. Biol. Medicine Saraswathy Nithiyanandam, Vinoth Kumar Sangaraju, Balachandran Manavalan, Gwang Lee
2023	J	`jnl`	DrugormerDTI: Drug Graphormer for drug-target interaction prediction. Comput. Biol. Medicine Jiayue Hu, Yu Wang, Chao Pang, Junru Jin, Nhat Truong Pham, Balachandran Manavalan, Leyi Wei
2023	J	`jnl`	Ensemble feature selection using Bonferroni, OWA and Induced OWA aggregation operators. Appl. Soft Comput. K. Janani, S. S. Mohanrasu, Chee Peng Lim, Balachandran Manavalan, R. Rakkiyappan
2023	J	`jnl`	Hybrid data augmentation and deep attention-based dilated convolutional-recurrent neural networks for speech emotion recognition. Expert Syst. Appl. Nhat Truong Pham, Duc Ngoc Minh Dang, Ngoc Duy Nguyen, Thanh Thi Nguyen, Hai Nguyen, Balachandran Manavalan, Chee Peng Lim, Sy Dzung Nguyen
2023	J	`jnl`	Identification of SH2 domain-containing proteins and motifs prediction by a deep learning method. Comput. Biol. Medicine Duanzhi Wu, Xin Fang, Kai Luan, Qijin Xu, Shiqi Lin, Shiying Sun, Jiaying Yang, Bingying Dong, Balachandran Manavalan, Zhijun Liao
2023	J	`jnl`	MonkeyNet: A robust deep convolutional neural network for monkeypox disease detection and classification. Neural Networks Diponkor Bala, Md Shamim Hossain, Mohammad Alamgir Hossain, Md. Ibrahim Abdullah, Md. Mizanur Rahman, Balachandran Manavalan, Naijie Gu, Mohammad S. Islam, Zhangjin Huang
2023	J	`jnl`	PSRQSP: An effective approach for the interpretable prediction of quorum sensing peptide using propensity score representation learning. Comput. Biol. Medicine Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Changmin Oh, Balachandran Manavalan, Watshara Shoombuatong
2023	—	`conf`	SER-Fuse: An Emotion Recognition Application Utilizing Multi-Modal, Multi-Lingual, and Multi-Feature Fusion. SoICT Nhat Truong Pham, Le Thi Phan, Duc Ngoc Minh Dang, Balachandran Manavalan
2023	J	`jnl`	SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning. Briefings Bioinform. Xin Zhang, Lesong Wei, Xiucai Ye, Kai Zhang, Saisai Teng, Zhongshen Li, Junru Jin, Min Jae Kim, Tetsuya Sakurai, Lizhen Cui, Balachandran Manavalan, Leyi Wei
2023	J	`jnl`	VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing. Bioinform. Kijin Kim, Kyungmin Park, Seonghyeon Lee, Seung-Hwan Baek, Tae-Hun Lim, Jongwoo Kim, Balachandran Manavalan, Jin-Won Song, Won-Keun Kim
2022	J	`jnl`	Accelerating bioactive peptide discovery via mutual information-based meta-learning. Briefings Bioinform. Wenjia He, Yi Jiang, Junru Jin, Zhongshen Li, Jiaojiao Zhao, Balachandran Manavalan, Ran Su, Xin Gao, Leyi Wei
2022	J	`jnl`	Amyotrophic lateral sclerosis disease-related mutations disrupt the dimerization of superoxide dismutase 1 - A comparative molecular dynamics simulation study. Comput. Biol. Medicine Shaherin Basith, Balachandran Manavalan, Gwang Lee
2022	J	`jnl`	Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2. Briefings Bioinform. Balachandran Manavalan, Shaherin Basith, Gwang Lee
2022	J	`jnl`	FRTpred: A novel approach for accurate prediction of protein folding rate and type. Comput. Biol. Medicine Balachandran Manavalan, Jooyoung Lee
2022	J	`jnl`	NEPTUNE: A novel computational approach for accurate and large-scale identification of tumor homing peptides. Comput. Biol. Medicine Phasit Charoenkwan, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Balachandran Manavalan, Watshara Shoombuatong
2022	J	`jnl`	SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins. Comput. Biol. Medicine Phasit Charoenkwan, Nalini Schaduangrat, Mohammad Ali Moni, Pietro Lio', Balachandran Manavalan, Watshara Shoombuatong
2022	J	`jnl`	STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction. Briefings Bioinform. Shaherin Basith, Gwang Lee, Balachandran Manavalan
2022	J	`jnl`	TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization. Briefings Bioinform. Young-Jun Jeon, Md. Mehedi Hasan, Hyun Woo Park, Ki Wook Lee, Balachandran Manavalan
2022	J	`jnl`	iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model. Briefings Bioinform. Hiroyuki Kurata, Sho Tsukiyama, Balachandran Manavalan
2021	J	`jnl`	BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides. Bioinform. Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
2021	J	`jnl`	Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework. Briefings Bioinform. Leyi Wei, Wenjia He, Adeel Malik, Ran Su, Lizhen Cui, Balachandran Manavalan
2021	J	`jnl`	Computational prediction of species-specific yeast DNA replication origin via iterative feature representation. Briefings Bioinform. Balachandran Manavalan, Shaherin Basith, Tae Hwan Shin, Gwang Lee
2021	J	`jnl`	Integrative machine learning framework for the identification of cell-specific enhancers from the human genome. Briefings Bioinform. Shaherin Basith, Md. Mehedi Hasan, Gwang Lee, Leyi Wei, Balachandran Manavalan
2021	J	`jnl`	Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. Md. Mehedi Hasan, Shaherin Basith, Mst. Shamima Khatun, Gwang Lee, Balachandran Manavalan, Hiroyuki Kurata
2021	J	`jnl`	NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning. Briefings Bioinform. Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata
2021	J	`jnl`	StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides. Briefings Bioinform. Phasit Charoenkwan, Wararat Chiangjong, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
2020	J	`jnl`	Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools. Briefings Bioinform. Ran Su, Jie Hu, Quan Zou, Balachandran Manavalan, Leyi Wei
2020	J	`jnl`	HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation. Bioinform. Md. Mehedi Hasan, Nalini Schaduangrat, Shaherin Basith, Gwang Lee, Watshara Shoombuatong, Balachandran Manavalan
2019	J	`jnl`	Iterative feature representations improve N4-methylcytosine site prediction. Bioinform. Leyi Wei, Ran Su, Shasha Luan, Zhijun Liao, Balachandran Manavalan, Quan Zou, Xiaolong Shi
2019	—	`ch.`	Protein-Carbohydrate Interactions. Encyclopedia of Bioinformatics and Computational Biology (3) Adeel Malik, Mohammad H. Baig, Balachandran Manavalan
2019	J	`jnl`	mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation. Bioinform. Balachandran Manavalan, Shaherin Basith, Tae Hwan Shin, Leyi Wei, Gwang Lee
2017	J	`jnl`	SVMQA: support-vector-machine-based protein single-model quality assessment. Bioinform. Balachandran Manavalan, Jooyoung Lee
2015	—	`conf`	Structure-based protein folding type classification and folding rate prediction. BIBM Balachandran Manavalan, Kunihiro Kuwajima, InSuk Joung, Jooyoung Lee