B. F. Francis Ouellette

33 papers B 1Journal 31Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Ten simple rules for writing a PLOS Computational Biology quick tips article.
PLoS Comput. Biol.
Patricia M. Palagi, Russell Schwartz, Scott Markel, B. F. Francis Ouellette
2020 J jnl
Genomic basis for RNA alterations in cancer.
Nat.
Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks
2018 J jnl
ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins.
Nucleic Acids Res.
Michal Krassowski, Marta Paczkowska, Kim Cullion, Tina Huang, Irakli Dzneladze, B. F. Francis Ouellette, Joseph Tadashi Yamada, Amelie Fradet-Turcotte, Jüri Reimand
2016 J jnl
Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.
PLoS Comput. Biol.
Michelle D. Brazas, B. F. Francis Ouellette
2015 J jnl
A Quick Guide for Building a Successful Bioinformatics Community.
PLoS Comput. Biol.
Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg
2013 J jnl
Education in Computational Biology Today and Tomorrow.
PLoS Comput. Biol.
Joanne A. Fox, B. F. Francis Ouellette
2013 J jnl
Navigating the changing learning landscape: perspective from bioinformatics.ca.
Briefings Bioinform.
Michelle D. Brazas, B. F. Francis Ouellette
2012 J jnl
A decade of web server updates at the bioinformatics links directory: 2003-2012.
Nucleic Acids Res.
Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette
2012 J jnl
Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).
BMC Bioinform.
Warren A. Cheung, B. F. Francis Ouellette, Wyeth W. Wasserman
2012 J jnl
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation
Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder
2011 J jnl
CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data.
PLoS Comput. Biol.
Kelvin Xi Zhang, B. F. Francis Ouellette
2011 J jnl
The 2011 bioinformatics links directory update: more resources, tools and databases and features to empower the bioinformatics community.
Nucleic Acids Res.
Michelle D. Brazas, David S. Yim, Joseph Tadashi Yamada, B. F. Francis Ouellette
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2010 J jnl
Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence.
Bioinform.
Kelvin Xi Zhang, B. F. Francis Ouellette
2010 J jnl
Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.
Nucleic Acids Res.
Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette
2009 J jnl
Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.
Nucleic Acids Res.
Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette
2009 J jnl
GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast.
BMC Bioinform.
Kelvin Xi Zhang, B. F. Francis Ouellette
2008 B conf
A new approach to predict interactions between integral membrane proteins in yeast.
IEEE Congress on Evolutionary Computation
Kelvin Xi Zhang, B. F. Francis Ouellette
2008 J jnl
Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.
Nucleic Acids Res.
Michelle D. Brazas, Joanne A. Fox, Timothy Brown, Scott McMillan, B. F. Francis Ouellette
2007 J jnl
Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory.
Nucleic Acids Res.
Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette
2007 — conf
Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks.
AINA Workshops (1)
Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette
2006 J jnl
A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.
Nucleic Acids Res.
Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette
2005 J jnl
Atlas - a data warehouse for integrative bioinformatics.
BMC Bioinform.
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette
2005 J jnl
Satellog: A database for the identification and prioritization of satellite repeats in disease association studies.
BMC Bioinform.
Perseus I. Missirlis, Carri-Lyn R. Mead, Stefanie L. Butland, B. F. Francis Ouellette, Rebecca S. Devon, Blair R. Leavitt, Robert A. Holt
2005 J jnl
The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers.
Nucleic Acids Res.
Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette
2005 J jnl
The Biomolecular Interaction Network Database and related tools 2005 update.
Nucleic Acids Res.
C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, Martha Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue
2004 J jnl
Pegasys: software for executing and integrating analyses of biological sequences.
BMC Bioinform.
Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette
2003 J jnl
GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results.
Bioinform.
Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette
2002 J jnl
Improving gene recognition accuracy by combining predictions from two gene-finding programs.
Bioinform.
Sanja Rogic, B. F. Francis Ouellette, Alan K. Mackworth
2001 J jnl
BIND - The Biomolecular Interaction Network Database.
Nucleic Acids Res.
Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue
1999 J jnl
GenBank.
Nucleic Acids Res.
Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp, David L. Wheeler
1998 J jnl
GenBank.
Nucleic Acids Res.
Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette