Axel von Kamp

17 papers Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine.
Briefings Bioinform.
Steffen Klamt, Jürgen Zanghellini, Axel von Kamp
2023 J jnl
Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysis.
Bioinform.
Axel von Kamp, Steffen Klamt
2022 J jnl
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks.
Bioinform.
Sven Thiele, Axel von Kamp, Pavlos Stephanos Bekiaris, Philipp Schneider, Steffen Klamt
2022 J jnl
StrainDesign: a comprehensive Python package for computational design of metabolic networks.
Bioinform.
Philipp Schneider, Pavlos Stephanos Bekiaris, Axel von Kamp, Steffen Klamt
2020 J jnl
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets.
PLoS Comput. Biol.
Philipp Schneider, Axel von Kamp, Steffen Klamt
2020 J jnl
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.
BMC Bioinform.
Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp
2018 J jnl
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli.
PLoS Comput. Biol.
Oliver Hädicke, Axel von Kamp, Timur Aydogan, Steffen Klamt
2015 J jnl
Genome-scale strain designs based on regulatory minimal cut sets.
Bioinform.
Radhakrishnan Mahadevan, Axel von Kamp, Steffen Klamt
2014 J jnl
Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks.
PLoS Comput. Biol.
Axel von Kamp, Steffen Klamt
2014 — ch.
Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks.
Large-Scale Networks in Engineering and Life Sciences
Steffen Klamt, Oliver Hädicke, Axel von Kamp
2013 J jnl
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol.
Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar
2012 J jnl
Minimal cut sets in a metabolic network are elementary modes in a dual network.
Bioinform.
Kathrin Ballerstein, Axel von Kamp, Steffen Klamt, Utz-Uwe Haus
2011 J jnl
An application programming interface for CellNetAnalyzer.
Biosyst.
Steffen Klamt, Axel von Kamp
2010 J jnl
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks.
J. Comput. Biol.
Regina Samaga, Axel von Kamp, Steffen Klamt
2009 J jnl
Computing paths and cycles in biological interaction graphs.
BMC Bioinform.
Steffen Klamt, Axel von Kamp
2006 J jnl
Metatool 5.0: fast and flexible elementary modes analysis.
Bioinform.
Axel von Kamp, Stefan Schuster
2005 J jnl
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
BMC Bioinform.
Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar