Avner Schlessinger

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2024 J jnl
A comprehensive exploration of the druggable conformational space of protein kinases using AI-predicted structures.
PLoS Comput. Biol.
Noah B. Herrington, Yan Chak Li, David Stein, Gaurav Pandey, Avner Schlessinger
2022 J jnl
Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues.
Database J. Biol. Databases Curation
Nicole Zatorski, David Stein, Rayees Rahman, Ravi Iyengar, Avner Schlessinger
2021 J jnl
Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge.
PLoS Comput. Biol.
Zhaoping Xiong, Minji Jeon, Robert J. Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, Multi-Targeting Drug DREAM Challenge Community, Kristen K. Dang, Alexander Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross L. Cagan
2021 J jnl
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res.
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
2019 J jnl
Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network.
PLoS Comput. Biol.
Peter M. U. Ung, Masahiro Sonoshita, Alex P. Scopton, Arvin C. Dar, Ross L. Cagan, Avner Schlessinger
2019 J jnl
KinaMetrix: a web resource to investigate kinase conformations and inhibitor space.
Nucleic Acids Res.
Rayees Rahman, Peter Man-Un Ung, Avner Schlessinger
2016 J jnl
GEN3VA: aggregation and analysis of gene expression signatures from related studies.
BMC Bioinform.
Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicolas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter Man-Un Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma'ayan
2015 J jnl
Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening.
PLoS Comput. Biol.
Claire Colas, Christof Grewer, Nicholas James Otte, Armanda Gameiro, Thomas Albers, Kurnvir Singh, Helen Shere, Massimiliano Bonomi, Jeff Holst, Avner Schlessinger
2014 J jnl
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res.
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
2011 J jnl
ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
2010 J jnl
Protein secondary structure appears to be robust under
Bioinform.
Christian Schaefer, Avner Schlessinger, Burkhard Rost
2007 J jnl
Natively Unstructured Loops Differ from Other Loops.
PLoS Comput. Biol.
Avner Schlessinger, Jinfeng Liu, Burkhard Rost
2007 J jnl
Natively unstructured regions in proteins identified from contact predictions.
Bioinform.
Avner Schlessinger, Marco Punta, Burkhard Rost
2006 J jnl
Epitome: database of structure-inferred antigenic epitopes.
Nucleic Acids Res.
Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost
2006 J jnl
PROFbval: predict flexible and rigid residues in proteins.
Bioinform.
Avner Schlessinger, Guy Yachdav, Burkhard Rost