Avi Srivastava

12 papers Misc 1Journal 11
YearRankTypeTitle / Venue / Authors
2022 J jnl
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets.
Bioinform.
Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love
2021 J jnl
Compression of quantification uncertainty for scRNA-seq counts.
Bioinform.
Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love
2021 J jnl
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data.
PLoS Comput. Biol.
Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B. Stadler
2020 J jnl
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification.
Bioinform.
Avi Srivastava, Laraib Malik, Hirak Sarkar, Rob Patro
2020 J jnl
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
Bioinform.
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
2019 J jnl
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level.
Bioinform.
Hirak Sarkar, Avi Srivastava, Rob Patro
2018 J jnl
A space and time-efficient index for the compacted colored de Bruijn graph.
Bioinform.
Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro
2018 Misc conf
Social Media Based Analysis of Opioid Epidemic Using Reddit.
AMIA
Sheetal Pandrekar Mangesh, Xin Chen, Gaurav Gopalkrishna, Avi Srivastava, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2017 J jnl
Improved data-driven likelihood factorizations for transcript abundance estimation.
Bioinform.
Mohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, Rob Patro
2016 J jnl
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes.
CoRR
Avi Srivastava, Hirak Sarkar, Laraib Malik, Rob Patro
2016 J jnl
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Bioinform.
Avi Srivastava, Hirak Sarkar, Nitish Gupta, Rob Patro
2014 J jnl
Texture-based medical image retrieval in compressed domain using compressive sensing.
Int. J. Bioinform. Res. Appl.
Kuldeep Yadav, Avi Srivastava, Ankush Mittal, M. A. Ansari