Ava P. Amini

11 papers A* 1Journal 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
Improving atlas-scale single-cell annotation models with hierarchical cross-entropy loss.
Nat. Comput. Sci.
Sebastiano Cultrera di Montesano, Davide D'Ascenzo, Srivatsan Raghavan, Ava P. Amini, Peter S. Winter, Lorin Crawford
2026 J jnl
Trainable subnetworks reveal insights into structure knowledge organization in protein language models.
PLoS Comput. Biol.
Ria Vinod, Ava P. Amini, Lorin Crawford, Kevin K. Yang
2025 J jnl
Benchmarking uncertainty quantification for protein engineering.
PLoS Comput. Biol.
Kevin P. Greenman, Ava P. Amini, Kevin K. Yang
2025 J jnl
Causal integration of chemical structures improves representations of microscopy images for morphological profiling.
CoRR
Yemin Yu, Neil A. Tenenholtz, Lester Mackey, Ying Wei, David Alvarez-Melis, Ava P. Amini, Alex X. Lu
2025 J jnl
ProtNote: a multimodal method for protein-function annotation.
Bioinform.
Samir Char, Nathaniel Corley, Sarah Alamdari, Kevin K. Yang, Ava P. Amini
2024 J jnl
Deeper evaluation of a single-cell foundation model.
Nat. Mac. Intell.
Rebecca Boiarsky, Nalini M. Singh, Alejandro Buendia, Ava P. Amini, Gad Getz, David A. Sontag
2024 A* conf
Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models.
ICML
Francesca-Zhoufan Li, Ava P. Amini, Yisong Yue, Kevin K. Yang, Alex Xijie Lu
2023 J jnl
Continuous Time Evidential Distributions for Irregular Time Series.
CoRR
Taylor W. Killian, Haoran Zhang, Thomas Hartvigsen, Ava P. Amini
2023 J jnl
Deep self-supervised learning for biosynthetic gene cluster detection and product classification.
PLoS Comput. Biol.
Carolina Rios-Martinez, Nicholas Bhattacharya, Ava P. Amini, Lorin Crawford, Kevin K. Yang
2023 J jnl
From noise to protein with image models.
Nat. Comput. Sci.
Ava P. Amini, Kevin K. Yang
2022 J jnl
Protein structure generation via folding diffusion.
CoRR
Kevin E. Wu, Kevin K. Yang, Rianne van den Berg, James Y. Zou, Alex X. Lu, Ava P. Amini