Attila Gürsoy

48 papers A 1C 1Misc 4Journal 29Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
Repurposing AI for protein interactions and dynamics: opportunities, limitations, and lessons.
Frontiers Bioinform.
E. Sila Ozdemir, Hyunbum Jang, Ruth Nussinov, Attila Gürsoy, Ozlem Keskin
2025 J jnl
DeepAllo: allosteric site prediction using protein language model (pLM) with multitask learning.
Bioinform.
Moaaz Khokhar, Ozlem Keskin, Attila Gürsoy
2024 J jnl
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces.
J. Chem. Inf. Model.
Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin
2024 J jnl
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations.
J. Chem. Inf. Model.
Damla Ovek, Ozlem Keskin, Attila Gürsoy
2024 J jnl
Structural coverage of the human interactome.
Briefings Bioinform.
Kayra Kosoglu, Zeynep Aydin, Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
2023 — conf
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment.
BIBM
Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin
2022 J jnl
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry.
Bioinform.
Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2022 J jnl
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions.
Bioinform.
Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2020 — ch.
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks.
Protein-Protein Interaction Networks
Farideh Halakou, Attila Gürsoy, Ozlem Keskin
2020 J jnl
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies.
Comput. Biol. Chem.
Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi
2020 — conf
Intelligent Edge Computing: State-of-the-art Techniques and Applications.
SIU
Waris Gill, Öznur Özkasap, Attila Gürsoy
2019 J jnl
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients.
PLoS Comput. Biol.
Cansu Dincer, Tugba Turkoglu Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag
2018 J jnl
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces.
Bioinform.
E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin
2017 C conf
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases.
CIBCB
Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin
2014 — conf
Modeling Structural Protein Interaction Networks for Betweenness Analysis.
ISCIS
Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy
2014 J jnl
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
Nucleic Acids Res.
Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2014 J jnl
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer.
PLoS Comput. Biol.
Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin
2012 J jnl
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets.
J. Chem. Inf. Model.
Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2012 J jnl
HotRegion: a database of predicted hot spot clusters.
Nucleic Acids Res.
Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin
2010 J jnl
HotPoint: hot spot prediction server for protein interfaces.
Nucleic Acids Res.
Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
2010 J jnl
Interaction prediction and classification of PDZ domains.
BMC Bioinform.
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
2009 J jnl
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
Briefings Bioinform.
Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2009 J jnl
Human Cancer Protein-Protein Interaction Network: A Structural Perspective.
PLoS Comput. Biol.
Gozde Kar, Attila Gürsoy, Ozlem Keskin
2009 J jnl
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
Bioinform.
Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
2008 J jnl
HotSprint: database of computational hot spots in protein interfaces.
Nucleic Acids Res.
Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
2008 — ch.
Principles of Protein Recognition and Properties of Protein-protein Interfaces.
Protein-protein Interactions and Networks
Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2007 J jnl
A Novel Economic-Based Scheduling Heuristic for Computational Grids.
Int. J. High Perform. Comput. Appl.
Omer Ozan Sonmez, Attila Gürsoy
2006 — conf
Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models.
ISCIS
Osman N. Yogurtçu, Engin Erzin, Attila Gürsoy
2005 Misc conf
Comparison of Pricing Policies for a Computational Grid Market.
PPAM
Omer Ozan Sonmez, Attila Gürsoy
2005 J jnl
PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing.
J. Supercomput.
Ali Kemal Sinop, Tolga Abaci, Ümit Akkus, Attila Gürsoy, Ugur Güdükbay
2005 J jnl
PRISM: protein interactions by structural matching.
Nucleic Acids Res.
Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
2005 J jnl
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.
Bioinform.
A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin
2004 J jnl
An ontology for collaborative construction and analysis of cellular pathways.
Bioinform.
Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay
2004 J jnl
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis.
J. Comput. Biol.
Ahmet Palazoglu, Attila Gürsoy, Yaman Arkun, Burak Erman
2004 J jnl
Performance and modularity benefits of message-driven execution.
J. Parallel Distributed Comput.
Attila Gürsoy, Laxmikant V. Kalé
2003 — conf
Application of Data Mining Techniques to Protein-Protein Interaction Prediction.
ISCIS
A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay
2003 Misc conf
Data Decomposition for Parallel K-means Clustering.
PPAM
Attila Gürsoy
2002 J jnl
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
Bioinform.
Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk
2001 — conf
Parallel Pruning for K-Means Clustering on Shared Memory Architectures.
Euro-Par
Attila Gürsoy, Ilker Cengiz
2000 — conf
Neighbourhood Preserving Load Balancing: A Self-Organizing Approach.
Euro-Par
Attila Gürsoy, Murat Atun
1999 — ch.
Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code.
Computational Molecular Dynamics
James C. Phillips, Robert Brunner, Aritomo Shinozaki, Milind A. Bhandarkar, Neal Krawetz, Attila Gürsoy, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten
1999 Misc conf
Mechanisms for Programming SMP Clusters.
PDPTA
Attila Gürsoy, Ilker Cengiz
1999 Misc conf
Parallel Hierarchical Radiosity.
PDPTA
R. Sireli, Attila Gürsoy
1996 J jnl
NAMD: a Parallel, Object-Oriented Molecular Dynamics Program.
Int. J. High Perform. Comput. Appl.
Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten
1996 — conf
Simulating Message-Driven Programs.
ICPP, Vol. 3
Attila Gürsoy, Laxmikant V. Kalé
1995 — conf
Modularity, Reuse and Efficiency with Message-Driven Libraries.
PP
Laxmikant V. Kalé, Attila Gürsoy
1994 — conf
Dagger: Combining Benefits of Synchronous and Asynchronous Communication Styles.
IPPS
Attila Gürsoy, Laxmikant V. Kalé
1991 A conf
High level support for divide-and-conquer parallelism.
SC
Attila Gürsoy, Laxmikant V. Kalé