Atsushi Niida

16 papers Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2020 J jnl
Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model.
J. Frankl. Inst.
Takanori Hasegawa, Rui Yamaguchi, Atsushi Niida, Satoru Miyano, Seiya Imoto
2020 J jnl
Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens.
Bioinform.
Takanori Hasegawa, Shuto Hayashi, Eigo Shimizu, Shinichi Mizuno, Atsushi Niida, Rui Yamaguchi, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto
2017 J jnl
Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level.
J. Comput. Biol.
Heewon Park, Atsushi Niida, Seiya Imoto, Satoru Miyano
2017 J jnl
phyC: Clustering cancer evolutionary trees.
PLoS Comput. Biol.
Yusuke Matsui, Atsushi Niida, Ryutaro Uchi, Koshi Mimori, Satoru Miyano, Teppei Shimamura
2016 J jnl
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models.
Comput. Stat. Data Anal.
Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto
2016 J jnl
Binary contingency table method for analysing gene mutation in cancer genome.
Int. J. Bioinform. Res. Appl.
Emi Ayada, Takanori Hasegawa, Atsushi Niida, Satoru Miyano, Seiya Imoto
2015 — conf
Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome.
ISBRA
Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto
2015 J jnl
Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis.
J. Comput. Biol.
Heewon Park, Atsushi Niida, Satoru Miyano, Seiya Imoto
2013 — conf
Multilayer Cluster Heat Map Visualizing Biological Tensor Data.
BSB
Atsushi Niida, Georg Tremmel, Seiya Imoto, Satoru Miyano
2012 J jnl
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
2012 J jnl
Statistical model-based testing to evaluate the recurrence of genomic aberrations.
Bioinform.
Atsushi Niida, Seiya Imoto, Teppei Shimamura, Satoru Miyano
2010 — conf
Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning.
BIBM
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
2010 J jnl
Model-free unsupervised gene set screening based on information enrichment in expression profiles.
Bioinform.
Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano
2010 — conf
Network profiling analysis for generating modulator-dependent gene networks.
BIBM Workshops
Teppei Shimamura, Seiya Imoto, Atsushi Niida, Masao Nagasaki, Rui Yamaguchi, Satoru Miyano
2009 J jnl
Gene set-based module discovery in the breast cancer transcriptome.
BMC Bioinform.
Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama
2008 J jnl
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.
BMC Bioinform.
Atsushi Niida, Andrew D. Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama