Asa Ben-Hur - RankMe

51 papers A 1B 1C 1Misc 1Journal 30Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	The role of chromatin state in intron retention: A case study in leveraging large scale deep learning models. PLoS Comput. Biol. Ahmed Daoud, Asa Ben-Hur
2023	J	`jnl`	Protein quality assessment with a loss function designed for high-quality decoys. Frontiers Bioinform. Soumyadip Roy, Asa Ben-Hur
2022	J	`jnl`	Insights into performance evaluation of com-pound-protein interaction prediction methods. CoRR Adiba Yaseen, Imran Amin, Naeem Akhter, Asa Ben-Hur, Fayyaz A. Minhas
2022	J	`jnl`	Insights into performance evaluation of compound-protein interaction prediction methods. Bioinform. Adiba Yaseen, Imran Amin, Naeem Akhter, Asa Ben-Hur, Fayyaz Minhas
2022	J	`jnl`	On the choice of negative examples for prediction of host-pathogen protein interactions. Frontiers Bioinform. Don Neumann, Soumyadip Roy, Fayyaz ul Amir Afsar Minhas, Asa Ben-Hur
2022	J	`jnl`	RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data. BMC Bioinform. Don Neumann, Anireddy S. N. Reddy, Asa Ben-Hur
2019	J	`jnl`	Comprehensive Evaluation of Deep Learning Architectures for Prediction of DNA/RNA Sequence Binding Specificities. CoRR Ameni Trabelsi, Mohamed Chaabane, Asa Ben-Hur
2019	J	`jnl`	Comprehensive evaluation of deep learning architectures for prediction of DNA/RNA sequence binding specificities. Bioinform. Ameni Trabelsi, Mohamed Chaabane, Asa Ben-Hur
2019	J	`jnl`	Ten ways to fool the masses with machine learning. CoRR Fayyaz ul Amir Afsar Minhas, Amina Asif, Asa Ben-Hur
2018	—	`conf`	BLRM: A Basic Linear Ranking Model for Protein Interface Prediction. BIBM Basir Shariat, Don Neumann, Asa Ben-Hur
2018	J	`jnl`	Learning protein binding affinity using privileged information. BMC Bioinform. Wajid Arshad Abbasi, Amina Asif, Asa Ben-Hur, Fayyaz ul Amir Afsar Minhas
2017	J	`jnl`	Amino acid composition predicts prion activity. PLoS Comput. Biol. Fayyaz ul Amir Afsar Minhas, Eric D. Ross, Asa Ben-Hur
2017	—	`conf`	GOstruct 2.0: Automated Protein Function Prediction for Annotated Proteins. BCB Indika Kahanda, Asa Ben-Hur
2017	—	`conf`	Protein Interface Prediction using Graph Convolutional Networks. NIPS Alex Fout, Jonathon Byrd, Basir Shariat, Asa Ben-Hur
2017	J	`jnl`	pyLEMMINGS: Large Margin Multiple Instance Classification and Ranking for Bioinformatics Applications. CoRR Amina Asif, Wajid Arshad Abbasi, Farzeen Munir, Asa Ben-Hur, Fayyaz ul Amir Afsar Minhas
2016	A	`conf`	Mendel: A Distributed Storage Framework for Similarity Searching over Sequencing Data. IPDPS Cameron Tolooee, Sangmi Lee Pallickara, Asa Ben-Hur
2016	J	`jnl`	Predicting metamorphic relations for testing scientific software: a machine learning approach using graph kernels. Softw. Test. Verification Reliab. Upulee Kanewala, James M. Bieman, Asa Ben-Hur
2015	J	`jnl`	Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct. J. Biomed. Semant. Christopher S. Funk, Indika Kahanda, Asa Ben-Hur, Karin M. Verspoor
2013	J	`jnl`	ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. Nucleic Acids Res. Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark F. Rogers, Kristina Ibáñez, Cesar Boullosa, Eduardo Andrés León, Asa Ben-Hur, Alfonso Valencia
2013	J	`jnl`	Combining heterogeneous data sources for accurate functional annotation of proteins. BMC Bioinform. Artem Sokolov, Christopher S. Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur
2013	—	`conf`	SpliceGrapherXT: From Splice Graphs to Transcripts Using RNA-Seq. BCB Mark F. Rogers, Christina Boucher, Asa Ben-Hur
2012	J	`jnl`	Multiple instance learning of Calmodulin binding sites. Bioinform. Fayyaz ul Amir Afsar Minhas, Asa Ben-Hur
2011	—	`conf`	Kernel methods for Calmodulin binding and binding site prediction. BCB Michael Hamilton, A. S. N. Reddy, Asa Ben-Hur
2011	—	`conf`	Multi-view prediction of protein function. BCB Artem Sokolov, Asa Ben-Hur
2010	J	`jnl`	Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method. J. Bioinform. Comput. Biol. Artem Sokolov, Asa Ben-Hur
2009	J	`jnl`	The use of gene ontology evidence codes in preventing classifier assessment bias. Bioinform. Mark F. Rogers, Asa Ben-Hur
2008	J	`jnl`	Support Vector Machines and Kernels for Computational Biology. PLoS Comput. Biol. Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch
2008	J	`jnl`	Support vector clustering. Scholarpedia Asa Ben-Hur
2007	J	`jnl`	A structural alignment kernel for protein structures. Bioinform. Jian Qiu, Martial Hue, Asa Ben-Hur, Jean-Philippe Vert, William Stafford Noble
2006	J	`jnl`	Choosing negative examples for the prediction of protein-protein interactions. BMC Bioinform. Asa Ben-Hur, William Stafford Noble
2006	—	`ch.`	Design and Analysis of the NIPS2003 Challenge. Feature Extraction Isabelle Guyon, Steve R. Gunn, Asa Ben-Hur, Gideon Dror
2006	—	`ch.`	Sequence Motifs: Highly Predictive Features of Protein Function. Feature Extraction Asa Ben-Hur, Douglas L. Brutlag
2005	—	`conf`	Kernel methods for predicting protein-protein interactions. ISMB (Supplement of Bioinformatics) Asa Ben-Hur, William Stafford Noble
2004	J	`jnl`	CREME: Cis-Regulatory Module Explorer for the human genome. Nucleic Acids Res. Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko
2004	—	`conf`	Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale. NIPS Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koller, Douglas L. Brutlag
2004	J	`jnl`	On probabilistic analog automata. Theor. Comput. Sci. Asa Ben-Hur, Alexander Roitershtein, Hava T. Siegelmann
2004	—	`conf`	Result Analysis of the NIPS 2003 Feature Selection Challenge. NIPS Isabelle Guyon, Steve R. Gunn, Asa Ben-Hur, Gideon Dror
2003	—	`conf`	CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments. ISMB (Supplement of Bioinformatics) Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp
2003	J	`jnl`	On probabilistic analog automata CoRR Asa Ben-Hur, Alexander Roitershtein, Hava T. Siegelmann
2003	J	`jnl`	Probabilistic analysis of a differential equation for linear programming. J. Complex. Asa Ben-Hur, Joshua Feinberg, Shmuel Fishman, Hava T. Siegelmann
2003	—	`conf`	Remote homology detection: a motif based approach. ISMB (Supplement of Bioinformatics) Asa Ben-Hur, Douglas L. Brutlag
2002	Misc	`conf`	A Stability Based Method for Discovering Structure in Clustered Data. Pacific Symposium on Biocomputing Asa Ben-Hur, André Elisseeff, Isabelle Guyon
2002	J	`jnl`	A Theory of Complexity for Continuous Time Systems. J. Complex. Asa Ben-Hur, Hava T. Siegelmann, Shmuel Fishman
2001	C	`conf`	Computation in Gene Networks. MCU Asa Ben-Hur, Hava T. Siegelmann
2001	J	`jnl`	Probabilistic analysis of a differential equation for linear programming CoRR Asa Ben-Hur, Joshua Feinberg, Shmuel Fishman, Hava T. Siegelmann
2001	J	`jnl`	Support Vector Clustering. J. Mach. Learn. Res. Asa Ben-Hur, David Horn, Hava T. Siegelmann, Vladimir Vapnik
2000	B	`conf`	A Support Vector Clustering Method. ICPR Asa Ben-Hur, Hava T. Siegelmann, David Horn, Vladimir Vapnik
2000	—	`conf`	A Support Vector Method for Clustering. NIPS Asa Ben-Hur, David Horn, Hava T. Siegelmann, Vladimir Vapnik
2000	—	`conf`	Macroscopical Molecular Computation with Gene Networks. UMC Hava T. Siegelmann, Asa Ben-Hur
1999	—	`conf`	Noisy Neural Networks and Generalizations. NIPS Hava T. Siegelmann, Alexander Roitershtein, Asa Ben-Hur
1998	—	`conf`	A Theory of Complexity for Continuous Time Dynamics. MCU (1) Hava T. Siegelmann, Asa Ben-Hur, Shmuel Fishman